About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18909
Clavulariidae_g1891
Clavulariidae_g18910
Clavulariidae_g18911REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18912
Clavulariidae_g18913REVERSE TRANSCRIPTASES
Clavulariidae_g18914ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18915SERINE/THREONINE-PROTEIN KINASE PIM
Clavulariidae_g18916TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g18917SERINE/THREONINE-PROTEIN KINASE PIM
Clavulariidae_g18918RETROTRANSPOSON
Clavulariidae_g18919THAP DOMAIN PROTEIN
Clavulariidae_g1892
Clavulariidae_g18920OPSIN
Clavulariidae_g18921OPSIN
Clavulariidae_g18922
Clavulariidae_g18923PROTEIN CBG26694
Clavulariidae_g18924ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18925IRE1-RELATED
Clavulariidae_g18926KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g18927REVERSE TRANSCRIPTASES
Clavulariidae_g18928EXPRESSED PROTEIN
Clavulariidae_g18929EXPRESSED PROTEIN
Clavulariidae_g1893PROPERDIN
Clavulariidae_g18930REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18931
Clavulariidae_g18932BETA-CAROTENE DIOXYGENASE
Clavulariidae_g18933REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18934
Clavulariidae_g18935PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g18936EXPRESSED PROTEIN
Clavulariidae_g18937
Clavulariidae_g18938KELCH PROTEIN
Clavulariidae_g18939
Clavulariidae_g1894PROPERDIN
Clavulariidae_g18940ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18941ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18942
Clavulariidae_g1894352 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g18944ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18945TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g18946REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18947
Clavulariidae_g18948CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18949REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1895PROPERDIN
Clavulariidae_g18950REVERSE TRANSCRIPTASES
Clavulariidae_g18951INTELECTIN
Clavulariidae_g18952POL PROTEIN
Clavulariidae_g18953
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