About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18819DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Clavulariidae_g1882RETROTRANSPOSON
Clavulariidae_g18820PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g18821UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g18822
Clavulariidae_g18823RETROTRANSPOSON
Clavulariidae_g18824RETROTRANSPOSON
Clavulariidae_g18825
Clavulariidae_g18826AEROLYSIN-LIKE PROTEIN-RELATED
Clavulariidae_g18827C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18828
Clavulariidae_g18829HISTIDINE-RICH GLYCOPROTEIN
Clavulariidae_g1883PROTEIN CBG26694
Clavulariidae_g18830REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18831
Clavulariidae_g18832
Clavulariidae_g18833
Clavulariidae_g18834
Clavulariidae_g18835
Clavulariidae_g18836REVERSE TRANSCRIPTASE
Clavulariidae_g18837IP13529P
Clavulariidae_g18838DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g18839HEH2P
Clavulariidae_g1884
Clavulariidae_g18840
Clavulariidae_g18841RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
Clavulariidae_g18842
Clavulariidae_g18843REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18844
Clavulariidae_g18845DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g18846REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18847
Clavulariidae_g18848
Clavulariidae_g18849TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1885SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES
Clavulariidae_g18850
Clavulariidae_g18851
Clavulariidae_g18852
Clavulariidae_g18853DNA POLYMERASE
Clavulariidae_g18854
Clavulariidae_g18855COLLAGEN ALPHA
Clavulariidae_g18856
Clavulariidae_g18857DNA-BINDING PROTEIN-RELATED-RELATED
Clavulariidae_g18858
Clavulariidae_g18859
Clavulariidae_g1886ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18860
Clavulariidae_g18861DNA POLYMERASE
Clavulariidae_g18862INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g18863LETHAL 2 GIANT LARVAE PROTEIN
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