About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19043ENZYMATIC POLYPROTEIN-RELATED
Clavulariidae_g19044
Clavulariidae_g19045ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19046
Clavulariidae_g19047SEL-1-LIKE PROTEIN
Clavulariidae_g19048
Clavulariidae_g19049
Clavulariidae_g1905PROPERDIN
Clavulariidae_g19050ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19051
Clavulariidae_g19052ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19053
Clavulariidae_g19054
Clavulariidae_g19055REVERSE TRANSCRIPTASES
Clavulariidae_g19056
Clavulariidae_g19057
Clavulariidae_g19058
Clavulariidae_g19059
Clavulariidae_g1906PROPERDIN
Clavulariidae_g19060
Clavulariidae_g19061DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g19062SEL-1-LIKE PROTEIN
Clavulariidae_g19063
Clavulariidae_g19064INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g19065
Clavulariidae_g19066
Clavulariidae_g19067
Clavulariidae_g19068
Clavulariidae_g19069HYDROXYSTEROID (11-BETA) DEHYDROGENASE 1-LIKE B-RELATED
Clavulariidae_g1907
Clavulariidae_g19070ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
Clavulariidae_g19071REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19072REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19073PROTEIN CBG26694
Clavulariidae_g19074PROTEIN EVA-1
Clavulariidae_g19075PROTEIN EVA-1
Clavulariidae_g19076DYNEIN LIGHT INTERMEDIATE CHAIN
Clavulariidae_g19077COLLAGEN ALPHA
Clavulariidae_g19078ATP-DEPENDENT RNA HELICASE DBP3
Clavulariidae_g19079NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
Clavulariidae_g1908
Clavulariidae_g19080HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED
Clavulariidae_g19081DOUBLE-STRANDED RNA-BINDING PROTEIN 6
Clavulariidae_g19082BTB/POZ DOMAIN-CONTAINING
Clavulariidae_g19083BTB/POZ DOMAIN-CONTAINING
Clavulariidae_g19084
Clavulariidae_g19085-
Clavulariidae_g19086HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED
Clavulariidae_g190876-PHOSPHOGLUCONOLACTONASE
Clavulariidae_g19088CHARGED MULTIVESICULAR BODY PROTEIN
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