About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19223REVERSE TRANSCRIPTASE
Clavulariidae_g19224REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19225
Clavulariidae_g19226
Clavulariidae_g19227
Clavulariidae_g19228CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19
Clavulariidae_g19229CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g1923DNAJ HOMOLOG SUBFAMILY C MEMBER 4
Clavulariidae_g19230NEPHRIN
Clavulariidae_g19231SRCR DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19232SOX TRANSCRIPTION FACTOR
Clavulariidae_g19233MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Clavulariidae_g19234
Clavulariidae_g19235
Clavulariidae_g19236
Clavulariidae_g19237THO COMPLEX SUBUNIT 1
Clavulariidae_g19238EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I
Clavulariidae_g19239
Clavulariidae_g1924PHOSPHOLIPASE A-2-ACTIVATING PROTEIN
Clavulariidae_g19240
Clavulariidae_g19241TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g19242
Clavulariidae_g19243URIDINE KINASE
Clavulariidae_g19244
Clavulariidae_g19245COLLAGEN ALPHA
Clavulariidae_g19246
Clavulariidae_g19247
Clavulariidae_g19248
Clavulariidae_g19249
Clavulariidae_g1925WD REPEAT-CONTAINING PROTEIN 43
Clavulariidae_g19250
Clavulariidae_g19251PROTEIN CBG26694
Clavulariidae_g19252
Clavulariidae_g19253ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19254TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g19255
Clavulariidae_g19256YIPPEE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19257CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19258
Clavulariidae_g19259
Clavulariidae_g1926UNCHARACTERIZED
Clavulariidae_g19260REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19261
Clavulariidae_g19262
Clavulariidae_g19263
Clavulariidae_g19264CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19265CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19266CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19267ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19268
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