About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19359TRANSPOSON
Clavulariidae_g1936SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN
Clavulariidae_g19360
Clavulariidae_g19361CXXC-TYPE ZINC FINGER PROTEIN 1
Clavulariidae_g19362IP13529P
Clavulariidae_g19363
Clavulariidae_g19364HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g19365HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g19366
Clavulariidae_g19367PELOTA
Clavulariidae_g19368X-BOX BINDING PROTEIN 1
Clavulariidae_g19369MAJOR VAULT PROTEIN
Clavulariidae_g1937COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER
Clavulariidae_g19370
Clavulariidae_g19371UNCHARACTERIZED
Clavulariidae_g19372SERINE/ARGININE REPETITIVE MATRIX PROTEIN 5-RELATED
Clavulariidae_g19373G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
Clavulariidae_g19374GOS-28 SNARE- RELATED
Clavulariidae_g19375SER/THR-RICH PROTEIN T10 IN DGCR REGION
Clavulariidae_g19376MYOINOSITOL OXYGENASE
Clavulariidae_g19377GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
Clavulariidae_g19378GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
Clavulariidae_g19379LD33804P
Clavulariidae_g1938UBIQUITIN-ACTIVATING ENZYME E1
Clavulariidae_g19380RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19381INTEGRATOR COMPLEX SUBUNIT 2
Clavulariidae_g19382TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA
Clavulariidae_g19383UNCHARACTERIZED
Clavulariidae_g19384PROTEIN PHOSPHATASE
Clavulariidae_g19385CALCIUM-TRANSPORTING ATPASE
Clavulariidae_g19386GUANYLYL CYCLASE DOMAIN CONTAINING PROTEIN 1 GUCD1
Clavulariidae_g19387NITRILASE C965.09-RELATED
Clavulariidae_g19388ACETOACETYL-COA SYNTHETASE
Clavulariidae_g19389SET AND MYND DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g1939LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
Clavulariidae_g19390
Clavulariidae_g19391BREAST CANCER METASTASIS-SUPPRESSOR 1
Clavulariidae_g19392VACUOLAR SORTING PROTEIN VPS29
Clavulariidae_g19393PROTEIN LIN-7 HOMOLOG
Clavulariidae_g19394POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED
Clavulariidae_g19395PHD/F-BOX CONTAINING PROTEIN
Clavulariidae_g19396MORN REPEAT-CONTAINING PROTEIN 3
Clavulariidae_g19397G PATCH DOMAIN CONTAINING PROTEIN 3
Clavulariidae_g19398
Clavulariidae_g19399MITOCHONDRIAL FISSION PROCESS PROTEIN 1
Clavulariidae_g194PCD6 INTERACTING PROTEIN-RELATED
Clavulariidae_g1940
Clavulariidae_g19400TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA
Clavulariidae_g194015-HYDROXYTRYPTAMINE RECEPTOR
Clavulariidae_g19402PROTEIN HGH1 HOMOLOG
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