About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19494ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
Clavulariidae_g19495ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
Clavulariidae_g19496F-BOX ONLY PROTEIN 3
Clavulariidae_g19497PHOSPHATIDYLINOSITOL SYNTHASE
Clavulariidae_g19498SOLUTE CARRIER FAMILY 34 SODIUM PHOSPHATE , MEMBER 2-RELATED
Clavulariidae_g19499T COMPLEX PROTEIN 10
Clavulariidae_g195SWI/SNF COMPLEX-RELATED
Clavulariidae_g1950METHYLTRANSFERASE
Clavulariidae_g19500LEUCINE RICH REPEAT FAMILY PROTEIN
Clavulariidae_g19501PESCADILLO - RELATED
Clavulariidae_g19502COILED-COIL ALPHA-HELICAL ROD PROTEIN 1
Clavulariidae_g19503MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS
Clavulariidae_g19504-
Clavulariidae_g19505ZINC FINGER PROTEIN ZIC AND GLI
Clavulariidae_g19506SERINE/THREONINE-PROTEIN KINASE
Clavulariidae_g19507DYNEIN HEAVY CHAIN FAMILY PROTEIN
Clavulariidae_g19508COILED-COIL DOMAIN-CONTAINING 74A
Clavulariidae_g19509DELTEX-RELATED
Clavulariidae_g1951METHYLTRANSFERASE
Clavulariidae_g19510ASPARTATE BETA-HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g19511UNCHARACTERIZED
Clavulariidae_g19512MULTI-COPPER OXIDASE
Clavulariidae_g19513EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3
Clavulariidae_g19514SORTILIN RELATED
Clavulariidae_g19515OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g19516ATP-DEPENDENT RNA HELICASE
Clavulariidae_g19517
Clavulariidae_g19518FOLLISTATIN-RELATED
Clavulariidae_g19519TRANSMEMBRANE GTPASE FZO1
Clavulariidae_g1952METHYLTRANSFERASE
Clavulariidae_g195202-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g19521
Clavulariidae_g19522RETINAL PROTEIN 4
Clavulariidae_g19523MITOCHONDRIAL CARRIER PROTEIN RIM2
Clavulariidae_g19524SOLUTE CARRIER FAMILY 22 MEMBER
Clavulariidae_g19525UNCHARACTERIZED
Clavulariidae_g19526UNCHARACTERIZED
Clavulariidae_g19527CHAPERONIN
Clavulariidae_g19528RPE-SPONDIN
Clavulariidae_g19529ZINC FINGER AND SCAN DOMAIN-CONTAINING
Clavulariidae_g1953METHYLTRANSFERASE
Clavulariidae_g19530SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g19531RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19532SYNAPTIC VESICLE GLYCOPROTEIN 2
Clavulariidae_g19533DIMETHYLANILINE MONOOXYGENASE
Clavulariidae_g19534SULFOTRANSFER_1 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19535RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19536SUGAR KINASE
Clavulariidae_g19537L-THREONINE 3-DEHYDROGENASE
Clavulariidae_g19538REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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