About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19584
Clavulariidae_g19585
Clavulariidae_g19586REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19587ENZYMATIC POLYPROTEIN-RELATED
Clavulariidae_g19588
Clavulariidae_g19589
Clavulariidae_g1959TANDEM PH DOMAIN CONTAINING PROTEIN
Clavulariidae_g19590
Clavulariidae_g19591
Clavulariidae_g19592EXPRESSED PROTEIN
Clavulariidae_g19593TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g19594CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19595
Clavulariidae_g19596CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19597RETROTRANSPOSON
Clavulariidae_g19598
Clavulariidae_g19599INHIBITOR OF GROWTH PROTEIN
Clavulariidae_g196DBX
Clavulariidae_g1960HL07962P-RELATED
Clavulariidae_g19600REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19601SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g19602EXPRESSED PROTEIN
Clavulariidae_g19603
Clavulariidae_g19604EXPRESSED PROTEIN
Clavulariidae_g19605ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g19606TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g19607CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19608PROTEIN CBG26694
Clavulariidae_g19609PROTEIN CBG26694
Clavulariidae_g1961N-ACETYLGLUCOSAMINYLTRANSFERASE VI
Clavulariidae_g19610
Clavulariidae_g19611NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Clavulariidae_g19612
Clavulariidae_g19613
Clavulariidae_g19614
Clavulariidae_g19615
Clavulariidae_g19616REVERSE TRANSCRIPTASES
Clavulariidae_g19617
Clavulariidae_g19618ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g19619
Clavulariidae_g1962BEIGE/BEACH-RELATED
Clavulariidae_g19620
Clavulariidae_g19621
Clavulariidae_g19622DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g19623REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19624
Clavulariidae_g19625RETROTRANSPOSON
Clavulariidae_g19626
Clavulariidae_g19627
Clavulariidae_g19628PHD-TYPE DOMAIN-CONTAINING PROTEIN
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