About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19539RAPSYN-RELATED
Clavulariidae_g1954SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
Clavulariidae_g19540REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19541UNCHARACTERIZED
Clavulariidae_g19542ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19543EPH RECEPTOR A5
Clavulariidae_g19544
Clavulariidae_g19545KINESIN LIGHT CHAIN
Clavulariidae_g19546EPH RECEPTOR A5
Clavulariidae_g19547TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g19548LD33695P
Clavulariidae_g19549
Clavulariidae_g1955MEVALONATE KINASE
Clavulariidae_g19550
Clavulariidae_g19551INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g19552PROTEIN CBG23764
Clavulariidae_g19553
Clavulariidae_g19554COLLAGEN ALPHA
Clavulariidae_g19555
Clavulariidae_g19556INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g19557
Clavulariidae_g19558DNA POLYMERASE
Clavulariidae_g19559INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g1956HISTONE-LYSINE N-METHYLTRANSFERASE SETD2
Clavulariidae_g19560DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19561EPH RECEPTOR A5
Clavulariidae_g19562REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19563RAPSYN-RELATED
Clavulariidae_g19564FTP DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19565EPH RECEPTOR A5
Clavulariidae_g19566RAPSYN-RELATED
Clavulariidae_g19567EPH RECEPTOR A5
Clavulariidae_g19568RAPSYN-RELATED
Clavulariidae_g19569FTP DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1957EXPRESSED PROTEIN
Clavulariidae_g19570REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19571MULTICOPPER OXIDASE-RELATED
Clavulariidae_g19572RAPSYN-RELATED
Clavulariidae_g19573FTP DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19574ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
Clavulariidae_g19575MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1
Clavulariidae_g19576RETROTRANSPOSON
Clavulariidae_g19577RETROTRANSPOSON
Clavulariidae_g19578SI:CH211-266K2.1
Clavulariidae_g19579
Clavulariidae_g1958INHIBITOR OF GROWTH PROTEIN
Clavulariidae_g19580INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g19581
Clavulariidae_g19582
Clavulariidae_g19583UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
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