About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19629
Clavulariidae_g1963ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4
Clavulariidae_g19630ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19631
Clavulariidae_g19632
Clavulariidae_g19633EXPRESSED PROTEIN
Clavulariidae_g19634PROTEIN CBG26694
Clavulariidae_g19635
Clavulariidae_g19636MYOTUBULARIN-RELATED
Clavulariidae_g19637
Clavulariidae_g19638ACETYL-COA HYDROLASE-RELATED
Clavulariidae_g19639REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1964
Clavulariidae_g19640RNA HELICASE
Clavulariidae_g19641RETROTRANSPOSON
Clavulariidae_g19642REVERSE TRANSCRIPTASE
Clavulariidae_g19643
Clavulariidae_g19644
Clavulariidae_g19645
Clavulariidae_g19646CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED
Clavulariidae_g19647REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19648UNCHARACTERIZED
Clavulariidae_g19649ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1965
Clavulariidae_g19650CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19651SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Clavulariidae_g19652PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19653REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19654RETROTRANSPOSON
Clavulariidae_g19655
Clavulariidae_g19656DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Clavulariidae_g19657METHYLTRANSFERASE
Clavulariidae_g19658METHYLTRANSFERASE
Clavulariidae_g19659DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1966
Clavulariidae_g19660
Clavulariidae_g19661
Clavulariidae_g19662HRAS-LIKE SUPPRESSOR - RELATED
Clavulariidae_g19663-
Clavulariidae_g19664SOLUTE CARRIER FAMILY 13 MEMBER
Clavulariidae_g19665DED DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19666
Clavulariidae_g19667
Clavulariidae_g19668METHYLTRANSFERASE
Clavulariidae_g19669METHYLTRANSFERASE
Clavulariidae_g1967DYNEIN HEAVY CHAIN
Clavulariidae_g19670
Clavulariidae_g19671
Clavulariidae_g19672PROTEIN CBG26694
Clavulariidae_g19673TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
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