About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19764
Clavulariidae_g19765IP13529P
Clavulariidae_g19766ATP-DEPENDENT DNA HELICASE
Clavulariidae_g19767KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g19768PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19769THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g1977
Clavulariidae_g19770PROTEIN VAV
Clavulariidae_g19771REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19772SI:DKEY-29D5.2
Clavulariidae_g19773
Clavulariidae_g19774TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Clavulariidae_g19775HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Clavulariidae_g19776EPHRIN_REC_LIKE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19777EXPRESSED PROTEIN
Clavulariidae_g19778REVERSE TRANSCRIPTASE
Clavulariidae_g19779
Clavulariidae_g1978CYTOKINE RECEPTOR
Clavulariidae_g19780GLPR-RELATED TRANSCRIPTIONAL REPRESSOR
Clavulariidae_g19781PROTEIN VAV
Clavulariidae_g19782BONUS, ISOFORM C-RELATED
Clavulariidae_g19783PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19784EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE
Clavulariidae_g19785
Clavulariidae_g19786
Clavulariidae_g19787NEUROTRANSMITTER GATED ION CHANNEL
Clavulariidae_g19788FIBROBLAST GROWTH FACTOR
Clavulariidae_g19789BRG-1 ASSOCIATED FACTOR 250 BAF250
Clavulariidae_g1979ANION EXCHANGE PROTEIN
Clavulariidae_g19790DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g19791TRANSAMIDASE
Clavulariidae_g19792NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1
Clavulariidae_g19793TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g19794NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1
Clavulariidae_g19795
Clavulariidae_g19796EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g19797INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19798NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1
Clavulariidae_g19799REVERSE TRANSCRIPTASES
Clavulariidae_g198ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1980CARBON CATABOLITE REPRESSOR PROTEIN 4
Clavulariidae_g19800ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19801PROTEIN CBG26694
Clavulariidae_g19802REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19803
Clavulariidae_g19804SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19805GLYCOPROTEIN HORMONE RECEPTOR
Clavulariidae_g19806C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19807
Clavulariidae_g19808
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