About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19809
Clavulariidae_g1981DNA POLYMERASE ETA
Clavulariidae_g19810
Clavulariidae_g19811
Clavulariidae_g19812
Clavulariidae_g19813REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19814
Clavulariidae_g19815DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g19816REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19817PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19818
Clavulariidae_g19819EXPRESSED PROTEIN
Clavulariidae_g1982RAP GTPASE-ACTIVATING PROTEIN
Clavulariidae_g19820ATP-DEPENDENT DNA HELICASE
Clavulariidae_g19821REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19822AGAP001331-PA-RELATED
Clavulariidae_g19823RETROTRANSPOSON
Clavulariidae_g19824
Clavulariidae_g19825PROTEIN CBG23764
Clavulariidae_g19826COLLAGEN ALPHA
Clavulariidae_g19827
Clavulariidae_g19828
Clavulariidae_g19829PROTEIN CBG26694
Clavulariidae_g1983CELL DIVISION CONTROL PROTEIN 6-RELATED
Clavulariidae_g19830REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19831
Clavulariidae_g19832REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19833PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Clavulariidae_g19834EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g19835INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19836PROTEIN CBG26694
Clavulariidae_g19837
Clavulariidae_g19838F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19839DNA2/NAM7 HELICASE FAMILY
Clavulariidae_g1984COLON CANCER-ASSOCIATED PROTEIN MIC1
Clavulariidae_g19840
Clavulariidae_g19841REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19842RETROTRANSPOSON
Clavulariidae_g19843
Clavulariidae_g19844PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19845TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g19846TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g19847THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g19848NETRIN/LAMININ-RELATED
Clavulariidae_g19849
Clavulariidae_g1985HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
Clavulariidae_g19850REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19851NETRIN/LAMININ-RELATED
Clavulariidae_g19852DUAL SPECIFICITY PROTEIN KINASE
Clavulariidae_g19853CYTOSINE-SPECIFIC METHYLTRANSFERASE
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