About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19854PROTEIN CBG26694
Clavulariidae_g19855ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19856
Clavulariidae_g19857FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g19858MULTICOPPER OXIDASE-RELATED
Clavulariidae_g19859REVERSE TRANSCRIPTASES
Clavulariidae_g1986YNEIN REGULATORY COMPLEX SUBUNIT 5
Clavulariidae_g19860PROTEIN CBG26694
Clavulariidae_g19861LD33695P
Clavulariidae_g19862PROTEIN CBG26694
Clavulariidae_g19863REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g198642,5-DIKETO-D-GLUCONIC ACID REDUCTASE
Clavulariidae_g19865ALDO/KETO REDUCTASE
Clavulariidae_g19866RETROTRANSPOSON
Clavulariidae_g19867PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19868OTU DOMAIN CONTAINING PROTEIN
Clavulariidae_g19869MULTI-COPPER OXIDASE
Clavulariidae_g1987MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
Clavulariidae_g19870COLLAGEN ALPHA
Clavulariidae_g19871FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19872INTELECTIN
Clavulariidae_g19873
Clavulariidae_g19874
Clavulariidae_g19875DNA POLYMERASE
Clavulariidae_g19876FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19877LYMPHOID-SPECIFIC HELICASE
Clavulariidae_g19878REVERSE TRANSCRIPTASE
Clavulariidae_g19879REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1988CELL DIVISION PROTEIN KINASE
Clavulariidae_g19880REVERSE TRANSCRIPTASES
Clavulariidae_g19881NADH-CYTOCHROME B5 REDUCTASE
Clavulariidae_g19882PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19883REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19884REVERSE TRANSCRIPTASES
Clavulariidae_g19885
Clavulariidae_g19886PROTEIN CBG23806
Clavulariidae_g19887
Clavulariidae_g19888IP13529P
Clavulariidae_g19889THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g1989FRIZZLED
Clavulariidae_g19890
Clavulariidae_g19891RETROTRANSPOSON
Clavulariidae_g19892
Clavulariidae_g19893SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g19894
Clavulariidae_g19895
Clavulariidae_g19896
Clavulariidae_g19897LP04239P
Clavulariidae_g19898TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Clavulariidae_g19899
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