About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g1999DNA PRIMASE SMALL SUBUNIT
Clavulariidae_g19990RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19991
Clavulariidae_g19992
Clavulariidae_g19993REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19994
Clavulariidae_g19995
Clavulariidae_g19996OTU DOMAIN CONTAINING PROTEIN
Clavulariidae_g19997DNA HELICASE-RELATED
Clavulariidae_g19998
Clavulariidae_g19999C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2
Clavulariidae_g20ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE
Clavulariidae_g200
Clavulariidae_g2000PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
Clavulariidae_g20000
Clavulariidae_g20001ATP-DEPENDENT DNA HELICASE
Clavulariidae_g20002
Clavulariidae_g20003
Clavulariidae_g20004CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20005
Clavulariidae_g20006
Clavulariidae_g20007
Clavulariidae_g20008FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g20009F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g2001PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
Clavulariidae_g20010BEN DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g20011UNCHARACTERIZED
Clavulariidae_g20012
Clavulariidae_g20013
Clavulariidae_g20014PROTEIN CBG26694
Clavulariidae_g20015RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20016
Clavulariidae_g20017PEPTIDE CHAIN RELEASE FACTOR
Clavulariidae_g20018
Clavulariidae_g20019INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g2002
Clavulariidae_g20020REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20021
Clavulariidae_g20022
Clavulariidae_g20023UNCHARACTERIZED
Clavulariidae_g20024AGAP001331-PA-RELATED
Clavulariidae_g20025
Clavulariidae_g20026REVERSE TRANSCRIPTASES
Clavulariidae_g20027PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20028RETROTRANSPOSON
Clavulariidae_g20029REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2003PROHIBITIN
Clavulariidae_g20030FTP DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20031
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