About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20078PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Clavulariidae_g20079INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g2008EXOSOME COMPLEX COMPONENT
Clavulariidae_g20080
Clavulariidae_g20081PROTEIN CBG26694
Clavulariidae_g20082
Clavulariidae_g20083ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20084DNA POLYMERASE
Clavulariidae_g20085
Clavulariidae_g20086COLLAGEN ALPHA
Clavulariidae_g20087
Clavulariidae_g20088INTELECTIN
Clavulariidae_g20089
Clavulariidae_g2009EQUILIBRATIVE NUCLEOSIDE TRANSPORTER
Clavulariidae_g20090NETRIN/LAMININ-RELATED
Clavulariidae_g20091REVERSE TRANSCRIPTASE
Clavulariidae_g20092SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g20093
Clavulariidae_g20094COLLAGEN ALPHA
Clavulariidae_g20095
Clavulariidae_g20096
Clavulariidae_g20097RETROTRANSPOSON
Clavulariidae_g20098NETRIN/LAMININ-RELATED
Clavulariidae_g20099F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g201SOLUTE CARRIER FAMILY 22 MEMBER
Clavulariidae_g2010
Clavulariidae_g20100
Clavulariidae_g20101ATP-DEPENDENT RNA HELICASE
Clavulariidae_g20102NETRIN/LAMININ-RELATED
Clavulariidae_g20103NETRIN/LAMININ-RELATED
Clavulariidae_g20104PROTEIN CBG26694
Clavulariidae_g20105ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20106
Clavulariidae_g20107REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20108-
Clavulariidae_g20109TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g2011RNA METHYLASE-RELATED
Clavulariidae_g20110RNA HELICASE
Clavulariidae_g20111
Clavulariidae_g20112EXPRESSED PROTEIN
Clavulariidae_g20113COATOMER SUBUNIT BETA
Clavulariidae_g20114CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Clavulariidae_g20115
Clavulariidae_g20116
Clavulariidae_g20117
Clavulariidae_g20118REVERSE TRANSCRIPTASES
Clavulariidae_g20119
Clavulariidae_g2012RAS-RELATED PROTEIN RAB
Clavulariidae_g20120PROTEIN CBG26694
Clavulariidae_g20121PROTEIN CBG26694
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