About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20168REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20169
Clavulariidae_g2017WD40 REPEAT PROTEIN
Clavulariidae_g20170
Clavulariidae_g20171REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20172MADF DOMAIN TRANSCRIPTION FACTOR
Clavulariidae_g20173UNCHARACTERIZED
Clavulariidae_g20174
Clavulariidae_g20175GUANINE NUCLEOTIDE EXCHANGE FACTOR
Clavulariidae_g20176REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20177
Clavulariidae_g20178REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20179MULTICOPPER OXIDASE-RELATED
Clavulariidae_g2018
Clavulariidae_g20180ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20181PROTEIN CBG26694
Clavulariidae_g20182PROTEIN CBG26694
Clavulariidae_g20183TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g20184THAP DOMAIN PROTEIN
Clavulariidae_g20185TRANSPOSON
Clavulariidae_g20186TRANSPOSON
Clavulariidae_g20187VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Clavulariidae_g20188THREE PRIME REPAIR EXONUCLEASE 1, 2
Clavulariidae_g20189SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g2019NME/NM23 FAMILY MEMBER 8
Clavulariidae_g20190SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g20191MULTICOPPER OXIDASE-RELATED
Clavulariidae_g20192PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Clavulariidae_g20193ATP-DEPENDENT DNA HELICASE
Clavulariidae_g20194REVERSE TRANSCRIPTASES
Clavulariidae_g20195EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20196DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20197MULTICOPPER OXIDASE-RELATED
Clavulariidae_g20198MULTICOPPER OXIDASE-RELATED
Clavulariidae_g20199
Clavulariidae_g202
Clavulariidae_g2020HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g20200
Clavulariidae_g20201
Clavulariidae_g20202
Clavulariidae_g20203
Clavulariidae_g20204
Clavulariidae_g20205DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g20206VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Clavulariidae_g20207ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20208REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20209REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2021REVERSE TRANSCRIPTASES
Clavulariidae_g20210
Clavulariidae_g20211EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
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