About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19944RETROTRANSPOSON
Clavulariidae_g19945
Clavulariidae_g19946
Clavulariidae_g19947
Clavulariidae_g19948
Clavulariidae_g19949
Clavulariidae_g1995HOMEOBOX PROTEIN NKX
Clavulariidae_g19950
Clavulariidae_g19951IP13529P
Clavulariidae_g19952
Clavulariidae_g19953IP13529P
Clavulariidae_g19954PROTEIN CBG23806
Clavulariidae_g19955
Clavulariidae_g19956
Clavulariidae_g19957ATP-DEPENDENT DNA HELICASE
Clavulariidae_g19958SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g19959-
Clavulariidae_g1996LEUCINE-RICH REPEAT-CONTAINING
Clavulariidae_g19960
Clavulariidae_g19961EXPRESSED PROTEIN
Clavulariidae_g19962
Clavulariidae_g19963ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19964PROTEIN CBG26694
Clavulariidae_g19965
Clavulariidae_g19966C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19967C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19968CXXC-TYPE ZINC FINGER PROTEIN 1
Clavulariidae_g19969THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g1997UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g19970
Clavulariidae_g19971EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g19972INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19973CXC2 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19974UNCHARACTERIZED
Clavulariidae_g19975
Clavulariidae_g19976-
Clavulariidae_g19977
Clavulariidae_g19978
Clavulariidae_g19979DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g1998HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
Clavulariidae_g19980PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19981
Clavulariidae_g19982
Clavulariidae_g19983
Clavulariidae_g19984SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g19985RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19986REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19987HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g19988
Clavulariidae_g19989
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