About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20032REVERSE TRANSCRIPTASES
Clavulariidae_g20033ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20034REVERSE TRANSCRIPTASES
Clavulariidae_g20035ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
Clavulariidae_g20036SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g20037
Clavulariidae_g20038
Clavulariidae_g20039EXPRESSED PROTEIN
Clavulariidae_g2004PCD6 INTERACTING PROTEIN-RELATED
Clavulariidae_g20040PROTEIN CBG26694
Clavulariidae_g20041THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g20042
Clavulariidae_g20043
Clavulariidae_g20044
Clavulariidae_g20045
Clavulariidae_g20046THAP DOMAIN PROTEIN
Clavulariidae_g20047EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20048
Clavulariidae_g20049
Clavulariidae_g2005HEAT SHOCK PROTEIN 70KDA
Clavulariidae_g20050L-ASPARAGINASE
Clavulariidae_g20051
Clavulariidae_g20052
Clavulariidae_g20053
Clavulariidae_g20054
Clavulariidae_g20055
Clavulariidae_g20056
Clavulariidae_g20057
Clavulariidae_g20058
Clavulariidae_g20059L-ASPARAGINASE
Clavulariidae_g2006NEGATIVE ELONGATION FACTOR E
Clavulariidae_g20060INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g20061REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20062
Clavulariidae_g20063REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20064
Clavulariidae_g20065PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20066PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20067ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20068TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g20069REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2007B-CELL LYMPHOMA/LEUKEMIA 10
Clavulariidae_g20070TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g20071REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20072
Clavulariidae_g20073RETROTRANSPOSON
Clavulariidae_g20074
Clavulariidae_g20075TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g20076
Clavulariidae_g20077
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