Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g20122 | MULTICOPPER OXIDASE-RELATED |
| Clavulariidae_g20123 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20124 | |
| Clavulariidae_g20125 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20126 | MULTICOPPER OXIDASE-RELATED |
| Clavulariidae_g20127 | TRANSPOSON |
| Clavulariidae_g20128 | PROTEIN CBG23764 |
| Clavulariidae_g20129 | PROTEIN CBG23764 |
| Clavulariidae_g2013 | VILLIN |
| Clavulariidae_g20130 | |
| Clavulariidae_g20131 | |
| Clavulariidae_g20132 | |
| Clavulariidae_g20133 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g20134 | |
| Clavulariidae_g20135 | |
| Clavulariidae_g20136 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20137 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20138 | |
| Clavulariidae_g20139 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g2014 | SYNAPTOSOMAL ASSOCIATED PROTEIN |
| Clavulariidae_g20140 | |
| Clavulariidae_g20141 | IP13529P |
| Clavulariidae_g20142 | |
| Clavulariidae_g20143 | PROTEIN CBG26694 |
| Clavulariidae_g20144 | |
| Clavulariidae_g20145 | PROTEIN CBG26694 |
| Clavulariidae_g20146 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20147 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20148 | PROTEIN CBG23764 |
| Clavulariidae_g20149 | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
| Clavulariidae_g2015 | STIMULATOR OF INTERFERON GENES PROTEIN |
| Clavulariidae_g20150 | |
| Clavulariidae_g20151 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20152 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g20153 | - |
| Clavulariidae_g20154 | EXPRESSED PROTEIN |
| Clavulariidae_g20155 | |
| Clavulariidae_g20156 | - |
| Clavulariidae_g20157 | |
| Clavulariidae_g20158 | INTELECTIN |
| Clavulariidae_g20159 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g2016 | RHO GTPASE ACTIVATING PROTEIN 11A |
| Clavulariidae_g20160 | THAP DOMAIN PROTEIN |
| Clavulariidae_g20161 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20162 | RETROTRANSPOSON |
| Clavulariidae_g20163 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20164 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20165 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20166 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Clavulariidae_g20167 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
