About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g199TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1990FRIZZLED
Clavulariidae_g19900PROTEIN CBG26694
Clavulariidae_g19901ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19902ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19903OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Clavulariidae_g19904
Clavulariidae_g19905
Clavulariidae_g19906
Clavulariidae_g19907
Clavulariidae_g19908RETROTRANSPOSON
Clavulariidae_g19909KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g1991N-ACETYLGLUTAMATE SYNTHASE
Clavulariidae_g19910
Clavulariidae_g19911
Clavulariidae_g19912HEH2P
Clavulariidae_g19913
Clavulariidae_g19914
Clavulariidae_g19915
Clavulariidae_g19916THAP DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g19917
Clavulariidae_g19918EXPRESSED PROTEIN
Clavulariidae_g19919
Clavulariidae_g1992CARBAMOYLTRANSFERASE FAMILY MEMBER
Clavulariidae_g19920RETROTRANSPOSON
Clavulariidae_g19921
Clavulariidae_g19922L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g19923REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19924DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19925
Clavulariidae_g19926
Clavulariidae_g19927RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19928
Clavulariidae_g19929
Clavulariidae_g1993HOMEOBOX PROTEIN NKX
Clavulariidae_g19930
Clavulariidae_g19931
Clavulariidae_g19932REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19933
Clavulariidae_g19934THAP DOMAIN PROTEIN
Clavulariidae_g19935EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19936
Clavulariidae_g19937HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g19938
Clavulariidae_g19939PROTEIN CBG26694
Clavulariidae_g1994RHO GUANINE EXCHANGE FACTOR-RELATED
Clavulariidae_g19940
Clavulariidae_g19941
Clavulariidae_g19942RETROTRANSPOSON
Clavulariidae_g19943RETROTRANSPOSON
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