About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19719F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g1972MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
Clavulariidae_g19720
Clavulariidae_g19721ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19722
Clavulariidae_g19723HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Clavulariidae_g19724TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g19725PROTEIN CBG26694
Clavulariidae_g19726ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19727PROTEIN CBG26694
Clavulariidae_g19728TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g19729
Clavulariidae_g1973
Clavulariidae_g19730PROTEIN CBG26694
Clavulariidae_g19731ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19732
Clavulariidae_g19733
Clavulariidae_g19734LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g19735REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19736
Clavulariidae_g19737
Clavulariidae_g19738CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g19739ATP-DEPENDENT DNA HELICASE
Clavulariidae_g1974
Clavulariidae_g19740ANTHRAX TOXIN RECEPTOR
Clavulariidae_g19741THAP DOMAIN PROTEIN
Clavulariidae_g19742EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19743
Clavulariidae_g19744TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g19745
Clavulariidae_g19746TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g19747AGAP001331-PA-RELATED
Clavulariidae_g19748THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g19749SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g1975LYSYL ENDOPEPTIDASE
Clavulariidae_g19750SI:CH211-196P9.1-RELATED
Clavulariidae_g19751
Clavulariidae_g19752RETROTRANSPOSON
Clavulariidae_g19753RETROTRANSPOSON
Clavulariidae_g19754
Clavulariidae_g19755
Clavulariidae_g19756PROTEIN VAV
Clavulariidae_g19757
Clavulariidae_g19758
Clavulariidae_g19759
Clavulariidae_g1976GOLGI REASSEMBLY STACKING PROTEIN GRASP
Clavulariidae_g19760TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g19761APPLE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19762PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19763RETROTRANSPOSON
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