About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19449
Clavulariidae_g1945ATP-DEPENDENT RNA AND DNA HELICASE
Clavulariidae_g19450CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE
Clavulariidae_g19451WD40 REPEAT PROTEIN
Clavulariidae_g19452NUCLEOPORIN NUP84-RELATED
Clavulariidae_g19453PROTEIN EVA-1
Clavulariidae_g19454PROTEASE M14 CARBOXYPEPTIDASE
Clavulariidae_g19455ABC TRANSPORTER G FAMILY MEMBER 28
Clavulariidae_g19456TMEM26 PROTEIN
Clavulariidae_g19457PRE-MRNA SPLICING FACTOR PRP8
Clavulariidae_g19458OLIGOPEPTIDE TRANSPORTER-RELATED
Clavulariidae_g19459SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED
Clavulariidae_g1946METHYLTRANSFERASE
Clavulariidae_g19460UNCHARACTERIZED
Clavulariidae_g19461ARP2/3 COMPLEX 21 KD SUBUNIT
Clavulariidae_g19462BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Clavulariidae_g19463SI:CH211-201H21.5-RELATED
Clavulariidae_g19464BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Clavulariidae_g19465
Clavulariidae_g19466EXPRESSED PROTEIN
Clavulariidae_g19467BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Clavulariidae_g19468DRAB5-RELATED
Clavulariidae_g19469
Clavulariidae_g1947METHYLTRANSFERASE
Clavulariidae_g19470AAA DOMAIN-CONTAINING
Clavulariidae_g19471TEKTIN
Clavulariidae_g19472UNCHARACTERIZED
Clavulariidae_g19473
Clavulariidae_g19474SPHINGOMYELIN PHOSPHODIESTERASE 4
Clavulariidae_g19475PROTEIN SIDEKICK
Clavulariidae_g19476
Clavulariidae_g19477EPH RECEPTOR A5
Clavulariidae_g19478FTP DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19479NEUROTRANSMITTER GATED ION CHANNEL
Clavulariidae_g1948METHYLTRANSFERASE
Clavulariidae_g19480SNF2/RAD54 FAMILY MEMBER
Clavulariidae_g19481METAL DEPENDENT HYDROLASE - RELATED
Clavulariidae_g19482CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCE
Clavulariidae_g19483NEUROTRANSMITTER GATED ION CHANNEL
Clavulariidae_g19484CORONIN
Clavulariidae_g19485HELICASE SRCAP-RELATED
Clavulariidae_g19486BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
Clavulariidae_g19487MYOSIN HEAVY CHAIN, NON-MUSCLE
Clavulariidae_g19488
Clavulariidae_g19489VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37
Clavulariidae_g1949METHYLTRANSFERASE
Clavulariidae_g19490FIBROSIN FAMILY MEMBER
Clavulariidae_g19491TRPL TRANSLOCATION DEFECT PROTEIN 14
Clavulariidae_g19492NUDIX HYDROLASE
Clavulariidae_g19493METALLOPHOSPHOESTERASE
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