About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19403MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE
Clavulariidae_g19404NFATC2-INTERACTING PROTEIN
Clavulariidae_g19405UBIQUITIN-CONJUGATING ENZYME E2
Clavulariidae_g19406
Clavulariidae_g19407
Clavulariidae_g19408MATRIN 3/NUCLEAR PROTEIN 220-RELATED
Clavulariidae_g19409PROTEIN CBG17840
Clavulariidae_g1941VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT
Clavulariidae_g19410PROTEIN FAM227B
Clavulariidae_g19411ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED
Clavulariidae_g19412TRANSDUCIN BETA-LIKE PROTEIN 2
Clavulariidae_g19413FOLLISTATIN-RELATED
Clavulariidae_g19414SOLUTE CARRIER FAMILY 22 MEMBER
Clavulariidae_g19415MITOCHONDRIAL CARRIER PROTEIN RIM2
Clavulariidae_g19416RAB GTPASE-BINDING EFFECTOR PROTEIN
Clavulariidae_g19417OXYSTEROL-BINDING PROTEIN-RELATED
Clavulariidae_g19418LATROPHILIN RECEPTOR-LIKE PROTEIN A
Clavulariidae_g19419THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
Clavulariidae_g1942MALONATE-SEMIALDEHYDE DEHYDROGENASE
Clavulariidae_g19420D-ALANYL-D-ALANINE CARBOXYPEPTIDASE
Clavulariidae_g19421PRE-MRNA-PROCESSING FACTOR 19
Clavulariidae_g19422
Clavulariidae_g19423SECRETED MODULAR CALCIUM-BINDING PROTEIN
Clavulariidae_g19424RAN GTPASE
Clavulariidae_g19425BETA-GLUCURONIDASE
Clavulariidae_g19426WD40 REPEAT PROTEIN
Clavulariidae_g19427GAMMA GLUTAMYL TRANSPEPTIDASE
Clavulariidae_g19428TMEM26 PROTEIN
Clavulariidae_g19429ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED
Clavulariidae_g1943U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11
Clavulariidae_g19430MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
Clavulariidae_g19431VACUOLAR SORTING PROTEIN 53
Clavulariidae_g19432GAMMA GLUTAMYL TRANSPEPTIDASE
Clavulariidae_g19433GAMMA GLUTAMYL TRANSPEPTIDASE
Clavulariidae_g19434FATTY ACID SYNTHASE
Clavulariidae_g19435FATTY ACID SYNTHASE
Clavulariidae_g19436GAMMA GLUTAMYL TRANSPEPTIDASE
Clavulariidae_g19437
Clavulariidae_g19438
Clavulariidae_g19439RAN GTPASE
Clavulariidae_g1944SEC14 RELATED PROTEIN
Clavulariidae_g19440MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG
Clavulariidae_g19441AMYLOID PROTEIN-BINDING PROTEIN 2
Clavulariidae_g19442STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1
Clavulariidae_g19443S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED
Clavulariidae_g19444CITRATE LYASE SUBUNIT BETA-RELATED
Clavulariidae_g19445NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g19446RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
Clavulariidae_g19447PROTEIN SIDEKICK
Clavulariidae_g19448PROTEIN DISPATCHED-RELATED
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