Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g20212 | |
Clavulariidae_g20213 | |
Clavulariidae_g20214 | |
Clavulariidae_g20215 | |
Clavulariidae_g20216 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g20217 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g20218 | |
Clavulariidae_g20219 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g2022 | |
Clavulariidae_g20220 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20221 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g20222 | NEUROTRANSMITTER GATED ION CHANNEL |
Clavulariidae_g20223 | |
Clavulariidae_g20224 | REVERSE TRANSCRIPTASES |
Clavulariidae_g20225 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20226 | |
Clavulariidae_g20227 | RETROTRANSPOSON |
Clavulariidae_g20228 | PROTEIN CBG26694 |
Clavulariidae_g20229 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g2023 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
Clavulariidae_g20230 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g20231 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g20232 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
Clavulariidae_g20233 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g20234 | TRIHELIX TRANSCRIPTION FACTOR ASIL2 |
Clavulariidae_g20235 | UNCHARACTERIZED |
Clavulariidae_g20236 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g20237 | REVERSE TRANSCRIPTASES |
Clavulariidae_g20238 | |
Clavulariidae_g20239 | FLAP ENDONUCLEASE FAMILY MEMBER |
Clavulariidae_g2024 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
Clavulariidae_g20240 | |
Clavulariidae_g20241 | DNA POLYMERASE |
Clavulariidae_g20242 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g20243 | THAP DOMAIN PROTEIN |
Clavulariidae_g20244 | THAP DOMAIN PROTEIN |
Clavulariidae_g20245 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20246 | |
Clavulariidae_g20247 | |
Clavulariidae_g20248 | |
Clavulariidae_g20249 | |
Clavulariidae_g2025 | |
Clavulariidae_g20250 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g20251 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20252 | |
Clavulariidae_g20253 | |
Clavulariidae_g20254 | PROTEIN, PUTATIVE-RELATED |
Clavulariidae_g20255 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g20256 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g20257 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |