About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20302
Clavulariidae_g20303
Clavulariidae_g20304REVERSE TRANSCRIPTASES
Clavulariidae_g20305SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g20306
Clavulariidae_g20307MULTICOPPER OXIDASE-RELATED
Clavulariidae_g20308
Clavulariidae_g20309
Clavulariidae_g2031
Clavulariidae_g20310
Clavulariidae_g20311
Clavulariidae_g20312
Clavulariidae_g20313NXPE FAMILY MEMBER
Clavulariidae_g20314ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20315
Clavulariidae_g20316MULTICOPPER OXIDASE-RELATED
Clavulariidae_g20317
Clavulariidae_g20318ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20319VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Clavulariidae_g2032
Clavulariidae_g20320
Clavulariidae_g20321
Clavulariidae_g20322COLLAGEN ALPHA
Clavulariidae_g20323PROTEIN CBG23764
Clavulariidae_g20324NXPE FAMILY MEMBER
Clavulariidae_g20325
Clavulariidae_g20326
Clavulariidae_g20327
Clavulariidae_g20328PROTEIN CBG26694
Clavulariidae_g20329
Clavulariidae_g2033
Clavulariidae_g20330RETROTRANSPOSON
Clavulariidae_g20331CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20332ANKYRIN REPEAT-CONTAINING
Clavulariidae_g20333
Clavulariidae_g20334REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20335UNCHARACTERIZED
Clavulariidae_g20336TRIHELIX TRANSCRIPTION FACTOR ASIL2
Clavulariidae_g20337PROTEIN CBG26694
Clavulariidae_g20338
Clavulariidae_g20339
Clavulariidae_g2034
Clavulariidae_g20340SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g20341
Clavulariidae_g20342TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11
Clavulariidae_g20343PROTEIN CBG26694
Clavulariidae_g20344TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g20345
Clavulariidae_g20346-
Clavulariidae_g20347ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
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