About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20348RH59310P
Clavulariidae_g20349AMMONIUM TRANSPORTER
Clavulariidae_g2035RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A
Clavulariidae_g20350PROTEIN CBG26694
Clavulariidae_g20351EXPRESSED PROTEIN
Clavulariidae_g20352
Clavulariidae_g20353
Clavulariidae_g20354VERTNIN
Clavulariidae_g20355
Clavulariidae_g20356
Clavulariidae_g20357EXPRESSED PROTEIN
Clavulariidae_g20358
Clavulariidae_g20359PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2036DNAJ HOMOLOG SUBFAMILY C MEMBER 13
Clavulariidae_g20360
Clavulariidae_g20361COLLAGEN ALPHA
Clavulariidae_g20362
Clavulariidae_g20363
Clavulariidae_g20364
Clavulariidae_g20365EXPRESSED PROTEIN
Clavulariidae_g20366ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20367MYOTUBULARIN-RELATED
Clavulariidae_g20368
Clavulariidae_g20369
Clavulariidae_g2037CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Clavulariidae_g20370MEVALONATE KINASE/GALACTOKINASE
Clavulariidae_g20371
Clavulariidae_g20372ATP-DEPENDENT DNA HELICASE
Clavulariidae_g20373
Clavulariidae_g20374AGAP001331-PA-RELATED
Clavulariidae_g20375PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20376THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g20377
Clavulariidae_g20378SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED
Clavulariidae_g20379RH59310P
Clavulariidae_g2038POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1
Clavulariidae_g20380
Clavulariidae_g20381
Clavulariidae_g20382EXPRESSED PROTEIN
Clavulariidae_g20383
Clavulariidae_g20384PROTEIN DD3-3
Clavulariidae_g20385
Clavulariidae_g20386PROTEIN DD3-3
Clavulariidae_g20387PROTEIN DD3-3
Clavulariidae_g20388PROTEIN DD3-3
Clavulariidae_g20389DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g2039TRICALBIN-1-RELATED
Clavulariidae_g20390
Clavulariidae_g20391SRCR DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20392
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