Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g20483 | PX DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20484 | HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20485 | |
| Clavulariidae_g20486 | IP13529P |
| Clavulariidae_g20487 | IP13529P |
| Clavulariidae_g20488 | |
| Clavulariidae_g20489 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g2049 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED |
| Clavulariidae_g20490 | |
| Clavulariidae_g20491 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Clavulariidae_g20492 | - |
| Clavulariidae_g20493 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g20494 | |
| Clavulariidae_g20495 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g20496 | |
| Clavulariidae_g20497 | THAP DOMAIN PROTEIN |
| Clavulariidae_g20498 | |
| Clavulariidae_g20499 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Clavulariidae_g205 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g2050 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
| Clavulariidae_g20500 | ZGC:195170 |
| Clavulariidae_g20501 | SI:CH211-108C17.2-RELATED-RELATED |
| Clavulariidae_g20502 | |
| Clavulariidae_g20503 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20504 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20505 | |
| Clavulariidae_g20506 | TRANSPOSASE |
| Clavulariidae_g20507 | NETRIN/LAMININ-RELATED |
| Clavulariidae_g20508 | |
| Clavulariidae_g20509 | |
| Clavulariidae_g2051 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20510 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20511 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20512 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g20513 | ANKYRIN REPEAT FAMILY PROTEIN |
| Clavulariidae_g20514 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g20515 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20516 | |
| Clavulariidae_g20517 | |
| Clavulariidae_g20518 | |
| Clavulariidae_g20519 | ANAEROBIC MAGNESIUM-PROTOPORPHYRIN IX MONOMETHYL ESTER CYCLASE-RELATED |
| Clavulariidae_g2052 | CHONDROITIN SYNTHASE |
| Clavulariidae_g20520 | |
| Clavulariidae_g20521 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20522 | PROTEIN CBG26694 |
| Clavulariidae_g20523 | PROTEIN CBG26694 |
| Clavulariidae_g20524 | UNCHARACTERIZED |
| Clavulariidae_g20525 | SI:CH211-108C17.2-RELATED-RELATED |
| Clavulariidae_g20526 | |
| Clavulariidae_g20527 | RETROTRANSPOSON |
