Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g20528 | RETROTRANSPOSON |
| Clavulariidae_g20529 | RETROTRANSPOSON |
| Clavulariidae_g2053 | |
| Clavulariidae_g20530 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20531 | |
| Clavulariidae_g20532 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20533 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20534 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Clavulariidae_g20535 | |
| Clavulariidae_g20536 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20537 | NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1 |
| Clavulariidae_g20538 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Clavulariidae_g20539 | PROTEIN CBG26694 |
| Clavulariidae_g2054 | ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 |
| Clavulariidae_g20540 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20541 | |
| Clavulariidae_g20542 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g20543 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Clavulariidae_g20544 | PROTEIN CBG26694 |
| Clavulariidae_g20545 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Clavulariidae_g20546 | |
| Clavulariidae_g20547 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Clavulariidae_g20548 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20549 | SI:ZFOS-911D5.4 |
| Clavulariidae_g2055 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| Clavulariidae_g20550 | UNCHARACTERIZED |
| Clavulariidae_g20551 | |
| Clavulariidae_g20552 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g20553 | |
| Clavulariidae_g20554 | |
| Clavulariidae_g20555 | |
| Clavulariidae_g20556 | |
| Clavulariidae_g20557 | |
| Clavulariidae_g20558 | |
| Clavulariidae_g20559 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g2056 | LEUCOKININ RECEPTOR-RELATED |
| Clavulariidae_g20560 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g20561 | EXOCYST COMPLEX PROTEIN EXO70 |
| Clavulariidae_g20562 | RETROTRANSPOSON |
| Clavulariidae_g20563 | COILED-COIL DOMAIN-CONTAINING PROTEIN 57 |
| Clavulariidae_g20564 | NETRIN/LAMININ-RELATED |
| Clavulariidae_g20565 | NETRIN/LAMININ-RELATED |
| Clavulariidae_g20566 | UBX-RELATED |
| Clavulariidae_g20567 | UNCHARACTERIZED |
| Clavulariidae_g20568 | HYDROLASE |
| Clavulariidae_g20569 | THYMOCYTE NUCLEAR PROTEIN 1 |
| Clavulariidae_g2057 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Clavulariidae_g20570 | THREONINE SYNTHASE FAMILY MEMBER |
| Clavulariidae_g20571 | CALCIUM BINDING PROTEINS |
| Clavulariidae_g20572 | CALCIUM BINDING PROTEINS |
