About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20573
Clavulariidae_g20574MRNA EXPORT FACTOR AND BUB3
Clavulariidae_g20575
Clavulariidae_g20576
Clavulariidae_g20577N-ACYLGLUCOSAMINE-2-EPIMERASE
Clavulariidae_g20578PROTEASE M1 ZINC METALLOPROTEASE
Clavulariidae_g20579ANKYRIN REPEAT CONTAINING
Clavulariidae_g2058IOJAP SUPERFAMILY ORTHOLOG
Clavulariidae_g20580SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Clavulariidae_g20581
Clavulariidae_g20582
Clavulariidae_g20583
Clavulariidae_g20584KINESIN-RELATED
Clavulariidae_g20585PENTRAXIN
Clavulariidae_g20586TROPOMODULIN
Clavulariidae_g20587ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER
Clavulariidae_g20588SIGNAL PEPTIDE PEPTIDASE
Clavulariidae_g20589
Clavulariidae_g2059OPSIN
Clavulariidae_g20590
Clavulariidae_g20591SI:DKEY-29D5.2
Clavulariidae_g20592IP13529P
Clavulariidae_g20593SI:CH211-196P9.1-RELATED
Clavulariidae_g20594SI:CH211-196P9.1-RELATED
Clavulariidae_g20595GLYCOPROTEIN HORMONE RECEPTOR
Clavulariidae_g20596THAP DOMAIN PROTEIN
Clavulariidae_g20597
Clavulariidae_g20598
Clavulariidae_g20599TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g206ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2060LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g20600UNCHARACTERIZED
Clavulariidae_g20601REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20602PROTEIN CBG26694
Clavulariidae_g20603TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g20604INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g20605COLLAGEN ALPHA
Clavulariidae_g20606
Clavulariidae_g20607SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g20608CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20609PROTEIN CBG26694
Clavulariidae_g2061VILLIN
Clavulariidae_g20610L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g20611
Clavulariidae_g20612L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g20613
Clavulariidae_g20614DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g20615
Clavulariidae_g20616REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20617
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