About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20618PROTEIN CBG26694
Clavulariidae_g20619GLYCOPROTEIN HORMONE RECEPTOR
Clavulariidae_g2062F-BOX ONLY PROTEIN
Clavulariidae_g20620ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20621REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20622REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20623REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20624ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20625
Clavulariidae_g20626REVERSE TRANSCRIPTASES
Clavulariidae_g20627UNCHARACTERIZED
Clavulariidae_g20628
Clavulariidae_g20629ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2063KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Clavulariidae_g20630
Clavulariidae_g20631REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20632-
Clavulariidae_g20633DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20634
Clavulariidae_g20635ENDONUCLEASE-RELATED
Clavulariidae_g20636INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g20637DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20638
Clavulariidae_g20639REVERSE TRANSCRIPTASES
Clavulariidae_g2064KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Clavulariidae_g20640
Clavulariidae_g20641REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20642
Clavulariidae_g20643REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20644ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20645CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20646
Clavulariidae_g20647GDP-MANNOSE 4,6-DEHYDRATASE
Clavulariidae_g20648-
Clavulariidae_g20649
Clavulariidae_g2065AGAP011099-PA
Clavulariidae_g20650ZINC PHOSPHODIESTERASE ELAC PROTEIN 2
Clavulariidae_g20651
Clavulariidae_g20652DNA-BINDING PROTEIN-RELATED-RELATED
Clavulariidae_g20653DNA2/NAM7 HELICASE FAMILY
Clavulariidae_g20654HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
Clavulariidae_g20655DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED
Clavulariidae_g20656CHROMOSOME TRANSMISSION FIDELITY FACTOR 18
Clavulariidae_g20657HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g20658
Clavulariidae_g20659RETROTRANSPOSON
Clavulariidae_g2066
Clavulariidae_g20660PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20661PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20662UNCHARACTERIZED
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