About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20708BILE ACID BETA-GLUCOSIDASE-RELATED
Clavulariidae_g20709THAP DOMAIN PROTEIN
Clavulariidae_g2071SUGAR HYDROLASE-RELATED
Clavulariidae_g20710
Clavulariidae_g20711REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20712TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g20713REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20714
Clavulariidae_g20715
Clavulariidae_g20716REVERSE TRANSCRIPTASES
Clavulariidae_g20717
Clavulariidae_g20718
Clavulariidae_g20719
Clavulariidae_g2072SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 2-RELATED
Clavulariidae_g20720
Clavulariidae_g20721REVERSE TRANSCRIPTASES
Clavulariidae_g20722
Clavulariidae_g20723HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Clavulariidae_g20724EXPRESSED PROTEIN
Clavulariidae_g20725
Clavulariidae_g20726COLLAGEN ALPHA
Clavulariidae_g20727
Clavulariidae_g20728CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20729
Clavulariidae_g2073NEURALIZED
Clavulariidae_g20730
Clavulariidae_g20731
Clavulariidae_g20732
Clavulariidae_g20733
Clavulariidae_g20734
Clavulariidae_g20735
Clavulariidae_g20736PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
Clavulariidae_g20737PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
Clavulariidae_g20738REVERSE TRANSCRIPTASES
Clavulariidae_g20739PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g2074CENTROSOMAL PROTEIN OF 128 KDA
Clavulariidae_g20740SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g20741ZGC:195170
Clavulariidae_g20742
Clavulariidae_g20743C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20744REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20745REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20746L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g20747PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
Clavulariidae_g20748REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20749
Clavulariidae_g2075FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Clavulariidae_g20750EXPRESSED PROTEIN
Clavulariidae_g20751EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g20752
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