Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g20708 | BILE ACID BETA-GLUCOSIDASE-RELATED |
Clavulariidae_g20709 | THAP DOMAIN PROTEIN |
Clavulariidae_g2071 | SUGAR HYDROLASE-RELATED |
Clavulariidae_g20710 | |
Clavulariidae_g20711 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20712 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g20713 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20714 | |
Clavulariidae_g20715 | |
Clavulariidae_g20716 | REVERSE TRANSCRIPTASES |
Clavulariidae_g20717 | |
Clavulariidae_g20718 | |
Clavulariidae_g20719 | |
Clavulariidae_g2072 | SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 2-RELATED |
Clavulariidae_g20720 | |
Clavulariidae_g20721 | REVERSE TRANSCRIPTASES |
Clavulariidae_g20722 | |
Clavulariidae_g20723 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
Clavulariidae_g20724 | EXPRESSED PROTEIN |
Clavulariidae_g20725 | |
Clavulariidae_g20726 | COLLAGEN ALPHA |
Clavulariidae_g20727 | |
Clavulariidae_g20728 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g20729 | |
Clavulariidae_g2073 | NEURALIZED |
Clavulariidae_g20730 | |
Clavulariidae_g20731 | |
Clavulariidae_g20732 | |
Clavulariidae_g20733 | |
Clavulariidae_g20734 | |
Clavulariidae_g20735 | |
Clavulariidae_g20736 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
Clavulariidae_g20737 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
Clavulariidae_g20738 | REVERSE TRANSCRIPTASES |
Clavulariidae_g20739 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g2074 | CENTROSOMAL PROTEIN OF 128 KDA |
Clavulariidae_g20740 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g20741 | ZGC:195170 |
Clavulariidae_g20742 | |
Clavulariidae_g20743 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20744 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20745 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20746 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g20747 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
Clavulariidae_g20748 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20749 | |
Clavulariidae_g2075 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
Clavulariidae_g20750 | EXPRESSED PROTEIN |
Clavulariidae_g20751 | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
Clavulariidae_g20752 |