About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20663RETROTRANSPOSON
Clavulariidae_g20664RETROTRANSPOSON
Clavulariidae_g20665RETROTRANSPOSON
Clavulariidae_g20666RETROTRANSPOSON
Clavulariidae_g20667TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g20668ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20669INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g2067TRICHOHYALIN-RELATED
Clavulariidae_g20670SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g20671CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20672SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g20673CHROMOBOX PROTEIN
Clavulariidae_g20674
Clavulariidae_g20675
Clavulariidae_g20676CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20677ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20678IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Clavulariidae_g20679TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g2068JITTERBUG, ISOFORM N
Clavulariidae_g20680GLYCOPROTEIN HORMONE RECEPTOR
Clavulariidae_g20681RETROTRANSPOSON
Clavulariidae_g2068252 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g20683
Clavulariidae_g20684ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20685GLYCOPROTEIN HORMONE RECEPTOR
Clavulariidae_g20686
Clavulariidae_g20687
Clavulariidae_g20688SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Clavulariidae_g20689
Clavulariidae_g2069DNAJ HOMOLOG SUBFAMILY C MEMBER 10
Clavulariidae_g20690UNCHARACTERIZED
Clavulariidae_g20691PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20692THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g20693
Clavulariidae_g20694VIMENTIN-TYPE INTERMEDIATE FILAMENT-ASSOCIATED COILED-COIL PROTEIN
Clavulariidae_g20695NETRIN/LAMININ-RELATED
Clavulariidae_g20696
Clavulariidae_g20697ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20698NETRIN/LAMININ-RELATED
Clavulariidae_g20699REVERSE TRANSCRIPTASE
Clavulariidae_g207PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2070APOPTOSIS-STIMULATING OF P53 PROTEIN
Clavulariidae_g20700
Clavulariidae_g20701NETRIN/LAMININ-RELATED
Clavulariidae_g20702
Clavulariidae_g20703ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20704MULTICOPPER OXIDASE-RELATED
Clavulariidae_g20705KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g20706PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20707MULTICOPPER OXIDASE-RELATED
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