About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20753CXC2 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20754
Clavulariidae_g20755ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20756PROTEIN CBG26694
Clavulariidae_g20757
Clavulariidae_g2075852 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g20759COLLAGEN ALPHA
Clavulariidae_g2076
Clavulariidae_g20760
Clavulariidae_g20761REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20762
Clavulariidae_g20763
Clavulariidae_g20764SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g20765
Clavulariidae_g20766RETROTRANSPOSON
Clavulariidae_g20767INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g20768PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20769REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2077PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Clavulariidae_g20770TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g20771
Clavulariidae_g20772
Clavulariidae_g20773
Clavulariidae_g20774REVERSE TRANSCRIPTASES
Clavulariidae_g20775REGULATOR-RELATED
Clavulariidae_g20776
Clavulariidae_g20777
Clavulariidae_g20778PROTEIN CBG26694
Clavulariidae_g20779REVERSE TRANSCRIPTASES
Clavulariidae_g2078PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Clavulariidae_g20780
Clavulariidae_g20781
Clavulariidae_g20782DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20783UNCHARACTERIZED
Clavulariidae_g20784RETROTRANSPOSON
Clavulariidae_g20785REVERSE TRANSCRIPTASES
Clavulariidae_g20786ZGC:195170
Clavulariidae_g20787SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g20788
Clavulariidae_g20789UNCHARACTERIZED
Clavulariidae_g2079PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Clavulariidae_g20790REVERSE TRANSCRIPTASES
Clavulariidae_g20791
Clavulariidae_g20792BONE MARROW PROTEOGLYCAN
Clavulariidae_g20793
Clavulariidae_g20794EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Clavulariidae_g2079560S RIBOSOMAL PROTEIN L36
Clavulariidae_g20796PHOSPHOACETYLGLUCOSAMINE MUTASE
Clavulariidae_g20797ASPARTYL/LYSYL-TRNA SYNTHETASE
Clavulariidae_g20798PROTEIN CBG26694
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