About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20889DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2089REGULATORY PROTEIN ZESTE
Clavulariidae_g20890
Clavulariidae_g20891CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Clavulariidae_g20892PROTEIN CBG26694
Clavulariidae_g20893STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6
Clavulariidae_g20894RETROTRANSPOSON
Clavulariidae_g20895COLLAGEN ALPHA
Clavulariidae_g20896REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20897
Clavulariidae_g20898ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20899TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g209PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2090NG37
Clavulariidae_g20900
Clavulariidae_g20901
Clavulariidae_g20902
Clavulariidae_g20903ENZYMATIC POLYPROTEIN-RELATED
Clavulariidae_g20904PROTEIN CBG23806
Clavulariidae_g20905
Clavulariidae_g20906SET DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20907
Clavulariidae_g20908
Clavulariidae_g20909
Clavulariidae_g2091MOLTING PROTEIN MLT-4
Clavulariidae_g20910MOLTING PROTEIN MLT-4
Clavulariidae_g20911PROTEIN CBG26694
Clavulariidae_g20912KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Clavulariidae_g20913
Clavulariidae_g20914ALPHA- 1,3 -FUCOSYLTRANSFERASE
Clavulariidae_g20915PROTEIN CBG23764
Clavulariidae_g20916
Clavulariidae_g20917
Clavulariidae_g20918
Clavulariidae_g20919
Clavulariidae_g2092TRNA-DIHYDROURIDINE SYNTHASE
Clavulariidae_g20920REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20921ALPHA- 1,3 -FUCOSYLTRANSFERASE
Clavulariidae_g20922ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20923ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20924TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g20925EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Clavulariidae_g20926RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20927-
Clavulariidae_g20928TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g20929HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Clavulariidae_g2093RHAMNOSYL O-METHYLTRANSFERASE
Clavulariidae_g20930EXPRESSED PROTEIN
Clavulariidae_g20931ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20932EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
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