Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g20889 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g2089 | REGULATORY PROTEIN ZESTE |
Clavulariidae_g20890 | |
Clavulariidae_g20891 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
Clavulariidae_g20892 | PROTEIN CBG26694 |
Clavulariidae_g20893 | STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 |
Clavulariidae_g20894 | RETROTRANSPOSON |
Clavulariidae_g20895 | COLLAGEN ALPHA |
Clavulariidae_g20896 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20897 | |
Clavulariidae_g20898 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20899 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g209 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g2090 | NG37 |
Clavulariidae_g20900 | |
Clavulariidae_g20901 | |
Clavulariidae_g20902 | |
Clavulariidae_g20903 | ENZYMATIC POLYPROTEIN-RELATED |
Clavulariidae_g20904 | PROTEIN CBG23806 |
Clavulariidae_g20905 | |
Clavulariidae_g20906 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g20907 | |
Clavulariidae_g20908 | |
Clavulariidae_g20909 | |
Clavulariidae_g2091 | MOLTING PROTEIN MLT-4 |
Clavulariidae_g20910 | MOLTING PROTEIN MLT-4 |
Clavulariidae_g20911 | PROTEIN CBG26694 |
Clavulariidae_g20912 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
Clavulariidae_g20913 | |
Clavulariidae_g20914 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
Clavulariidae_g20915 | PROTEIN CBG23764 |
Clavulariidae_g20916 | |
Clavulariidae_g20917 | |
Clavulariidae_g20918 | |
Clavulariidae_g20919 | |
Clavulariidae_g2092 | TRNA-DIHYDROURIDINE SYNTHASE |
Clavulariidae_g20920 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20921 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
Clavulariidae_g20922 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g20923 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20924 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
Clavulariidae_g20925 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
Clavulariidae_g20926 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20927 | - |
Clavulariidae_g20928 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g20929 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
Clavulariidae_g2093 | RHAMNOSYL O-METHYLTRANSFERASE |
Clavulariidae_g20930 | EXPRESSED PROTEIN |
Clavulariidae_g20931 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g20932 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |