About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21022REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21023IMMUNOGLOBULIN
Clavulariidae_g21024PUTATIVE-RELATED
Clavulariidae_g21025BTB/POZ DOMAIN-CONTAINING
Clavulariidae_g21026TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g21027TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g21028PHOSPHOLIPASE B, PLB1
Clavulariidae_g21029
Clavulariidae_g2103FUKUTIN RELATED PROTEIN
Clavulariidae_g21030COLLAGEN ALPHA
Clavulariidae_g21031SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g21032REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21033
Clavulariidae_g21034ENDONUCLEASE-RELATED
Clavulariidae_g21035DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21036
Clavulariidae_g21037REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21038ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21039HOMEO BOX HB9 LIKE A-RELATED
Clavulariidae_g2104G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g21040ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21041PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
Clavulariidae_g21042TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g21043REVERSE TRANSCRIPTASES
Clavulariidae_g21044ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g21045GENERAL RECEPTOR FOR PHOSPHOINOSITIDES 1-ASSOCIATED SCAFFOLD PROTEIN-RELATED
Clavulariidae_g21046REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21047ZINC FINGER PROTEIN 142
Clavulariidae_g21048ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21049
Clavulariidae_g2105CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
Clavulariidae_g21050
Clavulariidae_g21051
Clavulariidae_g21052CXC2 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21053REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21054
Clavulariidae_g21055REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21056
Clavulariidae_g21057REVERSE TRANSCRIPTASES
Clavulariidae_g21058PROTEIN CBG26694
Clavulariidae_g21059
Clavulariidae_g2106PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA COACTIVATOR 1 PGC-1 -RELATED
Clavulariidae_g21060EXPRESSED PROTEIN
Clavulariidae_g21061REVERSE TRANSCRIPTASES
Clavulariidae_g21062ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21063ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21064
Clavulariidae_g21065ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21066
Clavulariidae_g21067NUCLEOPORIN NUP84-RELATED
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