About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20979
Clavulariidae_g2098
Clavulariidae_g20980THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g20981CYTOCHROME P450 FAMILY 4
Clavulariidae_g20982TTC17 PROTEIN
Clavulariidae_g20983
Clavulariidae_g20984CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20985CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20986PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20987HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20988NUCLEOPORIN NUP84-RELATED
Clavulariidae_g20989
Clavulariidae_g2099CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED
Clavulariidae_g20990CXC2 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20991REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20992TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g20993RETROTRANSPOSON
Clavulariidae_g20994
Clavulariidae_g20995
Clavulariidae_g20996NUCLEOLAR AND SPINDLE-ASSOCIATED PROTEIN 1
Clavulariidae_g20997AMELOGENIN
Clavulariidae_g20998ARMADILLO REPEAT-CONTAINING PROTEIN 7
Clavulariidae_g20999REVERSE TRANSCRIPTASES
Clavulariidae_g21MACROGLOBULIN / COMPLEMENT
Clavulariidae_g210
Clavulariidae_g2100ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 53
Clavulariidae_g21000
Clavulariidae_g21001REVERSE TRANSCRIPTASES
Clavulariidae_g21002HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g21003ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21004REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21005PROTEIN CBG23806
Clavulariidae_g21006ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21007ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21008SI:DKEY-29D5.2
Clavulariidae_g21009EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Clavulariidae_g2101ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN
Clavulariidae_g21010RETROTRANSPOSON
Clavulariidae_g21011EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Clavulariidae_g21012REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21013REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21014
Clavulariidae_g21015INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21016REVERSE TRANSCRIPTASES
Clavulariidae_g21017ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
Clavulariidae_g21018HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g21019HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g2102TEX261 PROTEIN
Clavulariidae_g21020
Clavulariidae_g21021COLLAGEN ALPHA
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