About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21068
Clavulariidae_g21069REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2107
Clavulariidae_g21070REVERSE TRANSCRIPTASES
Clavulariidae_g21071CXC2 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21072
Clavulariidae_g21073GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g21074RAN GTPASE-ACTIVATING PROTEIN 1
Clavulariidae_g21075
Clavulariidae_g21076CENTROMERE PROTEIN I
Clavulariidae_g21077RETROTRANSPOSON
Clavulariidae_g21078RETROTRANSPOSON
Clavulariidae_g21079
Clavulariidae_g2108SEC15
Clavulariidae_g21080PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21081DNA POLYMERASE
Clavulariidae_g21082
Clavulariidae_g21083
Clavulariidae_g21084COLLAGEN ALPHA
Clavulariidae_g21085PROTEIN CBG26694
Clavulariidae_g21086
Clavulariidae_g21087
Clavulariidae_g21088DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g21089SI:DKEY-29D5.2
Clavulariidae_g2109ATP-DEPENDENT RNA HELICASE RHLE-RELATED
Clavulariidae_g21090
Clavulariidae_g21091REVERSE TRANSCRIPTASES
Clavulariidae_g21092CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19
Clavulariidae_g21093
Clavulariidae_g21094UNCHARACTERIZED
Clavulariidae_g21095UNCHARACTERIZED
Clavulariidae_g21096
Clavulariidae_g21097DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g21098DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g21099
Clavulariidae_g211TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g2110URACIL-DNA GLYCOSYLASE
Clavulariidae_g21100
Clavulariidae_g21101
Clavulariidae_g21102PROTEIN G1-LIKE2
Clavulariidae_g21103PROTEIN SIDEKICK
Clavulariidae_g21104
Clavulariidae_g21105ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21106DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g21107
Clavulariidae_g21108
Clavulariidae_g21109
Clavulariidae_g2111MITOFILIN
Clavulariidae_g21110ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21111PROTEIN CBG26694
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