About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21112PROTEIN CBG26694
Clavulariidae_g21113
Clavulariidae_g21114L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g21115TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g21116MRNA TURNOVER PROTEIN 4 MRTO4
Clavulariidae_g21117COILED-COIL DOMAIN-CONTAINING 166
Clavulariidae_g21118TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g21119TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g2112LEUCINE AMINOPEPTIDASE-RELATED
Clavulariidae_g21120
Clavulariidae_g21121KNIRPS-RELATED PROTEIN-RELATED
Clavulariidae_g21122RAN GTPASE-ACTIVATING PROTEIN 1
Clavulariidae_g21123
Clavulariidae_g21124KINETOCHORE SCAFFOLD 1
Clavulariidae_g21125PROTEIN SIDEKICK
Clavulariidae_g21126DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21127
Clavulariidae_g21128PROTEIN CBG26694
Clavulariidae_g21129REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2113TRANSCRIPTIONAL ADAPTER 1
Clavulariidae_g21130
Clavulariidae_g21131
Clavulariidae_g21132REVERSE TRANSCRIPTASES
Clavulariidae_g21133TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g21134KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g21135PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21136PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21137NUCLEOPROTEIN TPR-RELATED
Clavulariidae_g21138PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21139C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2114G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN
Clavulariidae_g21140TUDOR DOMAIN CONTAINING PROTEIN
Clavulariidae_g21141TUDOR DOMAIN CONTAINING PROTEIN
Clavulariidae_g21142ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21143DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g21144
Clavulariidae_g21145PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g21146PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g21147
Clavulariidae_g21148-
Clavulariidae_g21149
Clavulariidae_g2115
Clavulariidae_g21150
Clavulariidae_g21151
Clavulariidae_g21152LEUCINE-RICH REPEAT-CONTAINING
Clavulariidae_g21153SI:CH211-262H13.3-RELATED-RELATED
Clavulariidae_g21154REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21155BTB/POZ DOMAIN-CONTAINING
Clavulariidae_g21156BTB/POZ DOMAIN-CONTAINING
Clavulariidae_g21157REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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