Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g21112 | PROTEIN CBG26694 |
Clavulariidae_g21113 | |
Clavulariidae_g21114 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g21115 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g21116 | MRNA TURNOVER PROTEIN 4 MRTO4 |
Clavulariidae_g21117 | COILED-COIL DOMAIN-CONTAINING 166 |
Clavulariidae_g21118 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g21119 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g2112 | LEUCINE AMINOPEPTIDASE-RELATED |
Clavulariidae_g21120 | |
Clavulariidae_g21121 | KNIRPS-RELATED PROTEIN-RELATED |
Clavulariidae_g21122 | RAN GTPASE-ACTIVATING PROTEIN 1 |
Clavulariidae_g21123 | |
Clavulariidae_g21124 | KINETOCHORE SCAFFOLD 1 |
Clavulariidae_g21125 | PROTEIN SIDEKICK |
Clavulariidae_g21126 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21127 | |
Clavulariidae_g21128 | PROTEIN CBG26694 |
Clavulariidae_g21129 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g2113 | TRANSCRIPTIONAL ADAPTER 1 |
Clavulariidae_g21130 | |
Clavulariidae_g21131 | |
Clavulariidae_g21132 | REVERSE TRANSCRIPTASES |
Clavulariidae_g21133 | TNF RECEPTOR ASSOCIATED FACTOR |
Clavulariidae_g21134 | KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE |
Clavulariidae_g21135 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21136 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21137 | NUCLEOPROTEIN TPR-RELATED |
Clavulariidae_g21138 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21139 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g2114 | G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN |
Clavulariidae_g21140 | TUDOR DOMAIN CONTAINING PROTEIN |
Clavulariidae_g21141 | TUDOR DOMAIN CONTAINING PROTEIN |
Clavulariidae_g21142 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21143 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g21144 | |
Clavulariidae_g21145 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g21146 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g21147 | |
Clavulariidae_g21148 | - |
Clavulariidae_g21149 | |
Clavulariidae_g2115 | |
Clavulariidae_g21150 | |
Clavulariidae_g21151 | |
Clavulariidae_g21152 | LEUCINE-RICH REPEAT-CONTAINING |
Clavulariidae_g21153 | SI:CH211-262H13.3-RELATED-RELATED |
Clavulariidae_g21154 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21155 | BTB/POZ DOMAIN-CONTAINING |
Clavulariidae_g21156 | BTB/POZ DOMAIN-CONTAINING |
Clavulariidae_g21157 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |