About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21158
Clavulariidae_g21159
Clavulariidae_g2116ORGANIC ANION TRANSPORTER
Clavulariidae_g21160REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21161
Clavulariidae_g21162COILED-COIL DOMAIN-CONTAINING PROTEIN 157
Clavulariidae_g21163REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21164RETROTRANSPOSON
Clavulariidae_g21165RETROTRANSPOSON
Clavulariidae_g21166REVERSE TRANSCRIPTASE
Clavulariidae_g21167ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21168DYNEIN HEAVY CHAIN FAMILY PROTEIN
Clavulariidae_g21169ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2117CYTOCHROME P450 26
Clavulariidae_g21170SOLUTE CARRIER FAMILY 22 MEMBER
Clavulariidae_g21171SOLUTE CARRIER FAMILY 22 MEMBER
Clavulariidae_g21172
Clavulariidae_g21173SENTRIN/SUMO-SPECIFIC PROTEASE
Clavulariidae_g21174C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21175HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g21176TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g21177
Clavulariidae_g21178
Clavulariidae_g21179
Clavulariidae_g2118TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g21180PROTEIN CBG26694
Clavulariidae_g21181UNCHARACTERIZED
Clavulariidae_g21182
Clavulariidae_g21183
Clavulariidae_g21184UNCHARACTERIZED
Clavulariidae_g21185
Clavulariidae_g21186
Clavulariidae_g21187TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g21188AMINOPEPTIDASE O
Clavulariidae_g21189
Clavulariidae_g2119HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g21190
Clavulariidae_g21191
Clavulariidae_g21192COLLAGEN ALPHA
Clavulariidae_g21193PROTEIN CBG26694
Clavulariidae_g21194PROTEIN CBG26694
Clavulariidae_g21195L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g21196ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21197
Clavulariidae_g21198ZINC FINGER PROTEIN 106
Clavulariidae_g21199STIMULATOR OF INTERFERON GENES PROTEIN
Clavulariidae_g212REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2120TRYPSIN-RELATED
Clavulariidae_g21200
Clavulariidae_g21201DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
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