About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21293REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21294DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g21295TRANSPOSASE
Clavulariidae_g21296DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g21297SENTRIN/SUMO-SPECIFIC PROTEASE
Clavulariidae_g21298UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g21299REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g213
Clavulariidae_g2130SOX TRANSCRIPTION FACTOR
Clavulariidae_g21300REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21301IMMUNOGLOBULIN
Clavulariidae_g21302RETROTRANSPOSON
Clavulariidae_g21303TRANSPOSASE
Clavulariidae_g21304CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g21305PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21306RETROTRANSPOSON
Clavulariidae_g21307REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21308PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
Clavulariidae_g21309PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
Clavulariidae_g2131MAJOR VAULT PROTEIN
Clavulariidae_g21310
Clavulariidae_g21311
Clavulariidae_g21312ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21313
Clavulariidae_g21314PUTATIVE-RELATED
Clavulariidae_g21315SET DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g21316SET DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g21317
Clavulariidae_g21318TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g21319
Clavulariidae_g2132CYCLINS
Clavulariidae_g21320
Clavulariidae_g21321
Clavulariidae_g21322RETROTRANSPOSON
Clavulariidae_g21323TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g21324
Clavulariidae_g21325
Clavulariidae_g21326ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21327
Clavulariidae_g21328SI:CH211-266K2.1
Clavulariidae_g21329TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g2133GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN
Clavulariidae_g21330INTELECTIN
Clavulariidae_g21331UNCHARACTERIZED
Clavulariidae_g21332UNCHARACTERIZED
Clavulariidae_g21333
Clavulariidae_g21334REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21335
Clavulariidae_g21336DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g21337POTE ANKYRIN DOMAIN
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