Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g21338 | |
| Clavulariidae_g21339 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g2134 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
| Clavulariidae_g21340 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g21341 | INTELECTIN |
| Clavulariidae_g21342 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g21343 | |
| Clavulariidae_g21344 | - |
| Clavulariidae_g21345 | PX DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21346 | |
| Clavulariidae_g21347 | THAP DOMAIN-CONTAINING PROTEIN 6 |
| Clavulariidae_g21348 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21349 | NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN |
| Clavulariidae_g2135 | RAS-LIKE FAMILY MEMBER 11 |
| Clavulariidae_g21350 | COLLAGEN ALPHA |
| Clavulariidae_g21351 | |
| Clavulariidae_g21352 | |
| Clavulariidae_g21353 | |
| Clavulariidae_g21354 | THAP DOMAIN-CONTAINING |
| Clavulariidae_g21355 | |
| Clavulariidae_g21356 | REVERSE TRANSCRIPTASE |
| Clavulariidae_g21357 | |
| Clavulariidae_g21358 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21359 | |
| Clavulariidae_g2136 | RAS-LIKE FAMILY MEMBER 11 |
| Clavulariidae_g21360 | NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED |
| Clavulariidae_g21361 | |
| Clavulariidae_g21362 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21363 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21364 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
| Clavulariidae_g21365 | |
| Clavulariidae_g21366 | GTP-BINDING |
| Clavulariidae_g21367 | |
| Clavulariidae_g21368 | RETROTRANSPOSON |
| Clavulariidae_g21369 | |
| Clavulariidae_g2137 | CORTACTIN AND DREBRIN |
| Clavulariidae_g21370 | HEAT SHOCK PROTEIN 70KDA |
| Clavulariidae_g21371 | |
| Clavulariidae_g21372 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g21373 | |
| Clavulariidae_g21374 | RETROTRANSPOSON |
| Clavulariidae_g21375 | MADF DOMAIN TRANSCRIPTION FACTOR |
| Clavulariidae_g21376 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21377 | |
| Clavulariidae_g21378 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g21379 | - |
| Clavulariidae_g2138 | TRANSCRIPTION FACTOR SOX-30 |
| Clavulariidae_g21380 | |
| Clavulariidae_g21381 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
| Clavulariidae_g21382 |
