About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21383LD33804P
Clavulariidae_g21384ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21385UNC80
Clavulariidae_g21386
Clavulariidae_g21387NEUROTRANSMITTER GATED ION CHANNEL
Clavulariidae_g21388REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21389PENTRAXIN
Clavulariidae_g2139NG37
Clavulariidae_g21390RETROTRANSPOSON
Clavulariidae_g21391
Clavulariidae_g21392REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21393EXPRESSED PROTEIN
Clavulariidae_g21394UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN
Clavulariidae_g21395
Clavulariidae_g21396THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g21397
Clavulariidae_g21398DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g21399
Clavulariidae_g214
Clavulariidae_g2140UBIQUITIN-CONJUGATING ENZYME E2
Clavulariidae_g21400REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21401TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g21402JITTERBUG, ISOFORM N
Clavulariidae_g21403BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Clavulariidae_g21404BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Clavulariidae_g21405
Clavulariidae_g21406ZINC FINGER RNA-BINDING PROTEIN
Clavulariidae_g21407TUMOR NECROSIS FACTOR RECEPTOR
Clavulariidae_g21408
Clavulariidae_g21409REVERSE TRANSCRIPTASES
Clavulariidae_g2141G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
Clavulariidae_g21410PORCUPINE
Clavulariidae_g21411PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
Clavulariidae_g21412
Clavulariidae_g21413SCHLAFEN
Clavulariidae_g21414RAPSYN-RELATED
Clavulariidae_g21415STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g21416ENZYMATIC POLYPROTEIN-RELATED
Clavulariidae_g21417TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3
Clavulariidae_g21418ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g21419PROTEIN CBG26694
Clavulariidae_g2142CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN
Clavulariidae_g21420RETROTRANSPOSON
Clavulariidae_g21421NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1
Clavulariidae_g21422WD40 REPEAT PROTEIN
Clavulariidae_g21423NOTCH LIGAND FAMILY MEMBER
Clavulariidae_g21424G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g21425KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g21426TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g21427NOTCH LIGAND FAMILY MEMBER
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