Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g21473 | |
| Clavulariidae_g21474 | |
| Clavulariidae_g21475 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| Clavulariidae_g21476 | PERICENTRIN-LIKE PROTEIN, ISOFORM F |
| Clavulariidae_g21477 | UNCHARACTERIZED |
| Clavulariidae_g21478 | |
| Clavulariidae_g21479 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g2148 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
| Clavulariidae_g21480 | INTEGRIN ALPHA |
| Clavulariidae_g21481 | ADIPOCYTE-SPECIFIC PROTEIN 4-RELATED |
| Clavulariidae_g21482 | COILED-COIL DOMAIN-CONTAINING PROTEIN 89 |
| Clavulariidae_g21483 | THIAMIN PYROPHOSPHOKINASE |
| Clavulariidae_g21484 | YALI0C04136P |
| Clavulariidae_g21485 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| Clavulariidae_g21486 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| Clavulariidae_g21487 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| Clavulariidae_g21488 | |
| Clavulariidae_g21489 | |
| Clavulariidae_g2149 | CAT EYE SYNDROME CRITICAL REGION PROTEIN 6 |
| Clavulariidae_g21490 | |
| Clavulariidae_g21491 | |
| Clavulariidae_g21492 | |
| Clavulariidae_g21493 | EXPRESSED PROTEIN |
| Clavulariidae_g21494 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| Clavulariidae_g21495 | BONUS, ISOFORM C-RELATED |
| Clavulariidae_g21496 | |
| Clavulariidae_g21497 | JM1 PROTEIN |
| Clavulariidae_g21498 | BONUS, ISOFORM C-RELATED |
| Clavulariidae_g21499 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g215 | |
| Clavulariidae_g2150 | FIBROBLAST GROWTH FACTOR |
| Clavulariidae_g21500 | AMINE OXIDASE |
| Clavulariidae_g21501 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21502 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21503 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| Clavulariidae_g21504 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| Clavulariidae_g21505 | |
| Clavulariidae_g21506 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Clavulariidae_g21507 | |
| Clavulariidae_g21508 | |
| Clavulariidae_g21509 | |
| Clavulariidae_g2151 | DIHYDRODIPICOLINATE SYNTHASE |
| Clavulariidae_g21510 | |
| Clavulariidae_g21511 | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
| Clavulariidae_g21512 | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
| Clavulariidae_g21513 | |
| Clavulariidae_g21514 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21515 | PEROXISOMAL BIOGENESIS FACTOR 19 |
| Clavulariidae_g21516 | |
| Clavulariidae_g21517 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
