About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21563
Clavulariidae_g21564MYOSIN VII, XV
Clavulariidae_g21565U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
Clavulariidae_g21566RETROTRANSPOSON
Clavulariidae_g21567TYROSINE-PROTEIN KINASE
Clavulariidae_g21568PROTEIN CBG26694
Clavulariidae_g21569
Clavulariidae_g2157
Clavulariidae_g21570PROTEIN CBG26694
Clavulariidae_g21571UBIQUITIN-PROTEIN LIGASE E3C
Clavulariidae_g21572EXPRESSED PROTEIN
Clavulariidae_g21573MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Clavulariidae_g21574
Clavulariidae_g21575PROTEIN CBG23764
Clavulariidae_g21576COLLAGEN ALPHA
Clavulariidae_g21577
Clavulariidae_g21578SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g21579
Clavulariidae_g2158PROMININ PROM PROTEIN
Clavulariidae_g21580
Clavulariidae_g21581MULTICOPPER OXIDASE-RELATED
Clavulariidae_g21582MULTICOPPER OXIDASE-RELATED
Clavulariidae_g21583TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g21584MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Clavulariidae_g21585
Clavulariidae_g21586MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Clavulariidae_g21587
Clavulariidae_g21588REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21589
Clavulariidae_g2159METAXIN RELATED
Clavulariidae_g21590ENDONUCLEASE-RELATED
Clavulariidae_g21591PROTEIN CBG26694
Clavulariidae_g21592CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21593PROTEIN CBG26694
Clavulariidae_g21594
Clavulariidae_g21595
Clavulariidae_g21596
Clavulariidae_g21597
Clavulariidae_g21598REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21599ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g216PROTEIN, PUTATIVE-RELATED
Clavulariidae_g2160UNCHARACTERIZED
Clavulariidae_g21600REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21601
Clavulariidae_g21602RETROTRANSPOSON
Clavulariidae_g21603RETROTRANSPOSON
Clavulariidae_g21604RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g21605-
Clavulariidae_g21606REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21607OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
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