Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g21653 | UNCHARACTERIZED |
| Clavulariidae_g21654 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Clavulariidae_g21655 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Clavulariidae_g21656 | RETROTRANSPOSON |
| Clavulariidae_g21657 | RETROTRANSPOSON |
| Clavulariidae_g21658 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g21659 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g2166 | UNCHARACTERIZED |
| Clavulariidae_g21660 | |
| Clavulariidae_g21661 | |
| Clavulariidae_g21662 | |
| Clavulariidae_g21663 | |
| Clavulariidae_g21664 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21665 | TRANSPOSASE |
| Clavulariidae_g21666 | |
| Clavulariidae_g21667 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g21668 | |
| Clavulariidae_g21669 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g2167 | CONDENSIN COMPLEX SUBUNIT 3-RELATED |
| Clavulariidae_g21670 | |
| Clavulariidae_g21671 | UNCHARACTERIZED |
| Clavulariidae_g21672 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21673 | GLYCOPROTEIN HORMONE RECEPTOR |
| Clavulariidae_g21674 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Clavulariidae_g21675 | S -2-HYDROXY-ACID OXIDASE-RELATED |
| Clavulariidae_g21676 | - |
| Clavulariidae_g21677 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| Clavulariidae_g21678 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g21679 | GTPASE ERA |
| Clavulariidae_g2168 | SYNAPTOBREVIN HOMOLOG YKT6 |
| Clavulariidae_g21680 | ENOYL-COA HYDRATASE-RELATED |
| Clavulariidae_g21681 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Clavulariidae_g21682 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Clavulariidae_g21683 | GLYCOPROTEIN HORMONE RECEPTOR |
| Clavulariidae_g21684 | CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN |
| Clavulariidae_g21685 | UNCHARACTERIZED |
| Clavulariidae_g21686 | RHO GDP-DISSOCIATION INHIBITOR |
| Clavulariidae_g21687 | RHO GDP-DISSOCIATION INHIBITOR |
| Clavulariidae_g21688 | PROTEIN DISULFIDE ISOMERASE |
| Clavulariidae_g21689 | - |
| Clavulariidae_g2169 | - |
| Clavulariidae_g21690 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| Clavulariidae_g21691 | - |
| Clavulariidae_g21692 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21693 | PROTEIN CBG26694 |
| Clavulariidae_g21694 | MOLTING PROTEIN MLT-4 |
| Clavulariidae_g21695 | SARCOSINE DEHYDROGENASE-RELATED |
| Clavulariidae_g21696 | |
| Clavulariidae_g21697 | |
| Clavulariidae_g21698 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
