About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21789HOMEOBOX PROTEIN UNC-4 HOMOLOG
Clavulariidae_g2179GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
Clavulariidae_g21790MEVALONATE KINASE/GALACTOKINASE
Clavulariidae_g21791ENOYL-COA HYDRATASE-RELATED
Clavulariidae_g21792TRNA-DIHYDROURIDINE SYNTHASE
Clavulariidae_g21793RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER
Clavulariidae_g21794POTE ANKYRIN DOMAIN
Clavulariidae_g2179580 KDA MCM3-ASSOCIATED PROTEIN
Clavulariidae_g21796DIACYLGLYCEROL LIPASE HOMOLOG-RELATED
Clavulariidae_g21797ARYLACETAMIDE DEACETYLASE
Clavulariidae_g21798ARYLACETAMIDE DEACETYLASE
Clavulariidae_g21799DYNEIN HEAVY CHAIN
Clavulariidae_g218PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2180
Clavulariidae_g21800
Clavulariidae_g21801CENTROSOMAL PROTEIN OF 131 KDA
Clavulariidae_g21802BETA-TUBULIN COFACTOR D
Clavulariidae_g21803FORMIMINOTRANSFERASE-CYCLODEAMINASE
Clavulariidae_g21804COILIN P80
Clavulariidae_g21805UNKEMPT FAMILY MEMBER
Clavulariidae_g21806
Clavulariidae_g21807PHD FINGER TRANSCRIPTION FACTOR
Clavulariidae_g21808
Clavulariidae_g21809AMINOTRANSFERASE
Clavulariidae_g2181
Clavulariidae_g21810METALLOPROTEASE
Clavulariidae_g21811REGULATORY-ASSOCIATED PROTEIN OF MTOR
Clavulariidae_g21812P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN
Clavulariidae_g21813SIMILAR TO PREFERENTIALLY EXPRESSED ANTIGEN IN MELANOMA-LIKE 3
Clavulariidae_g2181440S RIBOSOMAL PROTEIN S15A
Clavulariidae_g21815GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Clavulariidae_g21816PHOSPHATIDYLINOSITOL TRANSFER PROTEIN
Clavulariidae_g21817GUANYLYL CYCLASE
Clavulariidae_g21818E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
Clavulariidae_g21819RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATED
Clavulariidae_g2182
Clavulariidae_g21820PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
Clavulariidae_g21821FORMIN-LIKE PROTEIN
Clavulariidae_g21822CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7
Clavulariidae_g21823ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
Clavulariidae_g21824NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED
Clavulariidae_g21825UNCHARACTERIZED
Clavulariidae_g21826ADP RIBOSYLATION FACTOR-RELATED
Clavulariidae_g21827
Clavulariidae_g21828SPLICING FACTOR 3B SUBUNIT 4
Clavulariidae_g21829VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Clavulariidae_g2183
Clavulariidae_g21830ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Clavulariidae_g21831KAZRIN-RELATED
Clavulariidae_g21832KAZRIN-RELATED
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