Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g21879 | TTC17 PROTEIN |
| Clavulariidae_g2188 | V-TYPE PROTON ATPASE SUBUNIT B |
| Clavulariidae_g21880 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Clavulariidae_g21881 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| Clavulariidae_g21882 | PROTEIN LZIC |
| Clavulariidae_g21883 | |
| Clavulariidae_g21884 | CALSYNTENIN |
| Clavulariidae_g21885 | ACID PHOSPHATASE-RELATED |
| Clavulariidae_g21886 | EF-HAND DOMAIN-CONTAINING PROTEIN D |
| Clavulariidae_g21887 | LD44762P |
| Clavulariidae_g21888 | COLD SHOCK DOMAIN CONTAINING PROTEINS |
| Clavulariidae_g21889 | RNA RECOGNITION MOTIF-CONTAINING |
| Clavulariidae_g2189 | HOMEOBOX PROTEIN EMX-RELATED |
| Clavulariidae_g21890 | MYELOID LEUKEMIA FACTOR |
| Clavulariidae_g21891 | PROTEIN RER1 |
| Clavulariidae_g21892 | NAD KINASE |
| Clavulariidae_g21893 | |
| Clavulariidae_g21894 | |
| Clavulariidae_g21895 | FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g21896 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
| Clavulariidae_g21897 | LOQUACIOUS, ISOFORM B |
| Clavulariidae_g21898 | ZYX102 PROTEIN |
| Clavulariidae_g21899 | CLEAVAGE STIMULATION FACTOR SUBUNIT 1 |
| Clavulariidae_g219 | |
| Clavulariidae_g2190 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| Clavulariidae_g21900 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
| Clavulariidae_g21901 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
| Clavulariidae_g21902 | GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE MESH1 |
| Clavulariidae_g21903 | - |
| Clavulariidae_g21904 | TMEM26 PROTEIN |
| Clavulariidae_g21905 | FOLLISTATIN-RELATED |
| Clavulariidae_g21906 | |
| Clavulariidae_g21907 | KREMEN PROTEIN |
| Clavulariidae_g21908 | WD REPEAT PROTEIN 8-RELATED |
| Clavulariidae_g21909 | |
| Clavulariidae_g2191 | PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B |
| Clavulariidae_g21910 | RETICULOCALBIN |
| Clavulariidae_g21911 | PKSB |
| Clavulariidae_g21912 | CYCLIN |
| Clavulariidae_g21913 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
| Clavulariidae_g21914 | CONDENSIN |
| Clavulariidae_g21915 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
| Clavulariidae_g21916 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Clavulariidae_g21917 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Clavulariidae_g21918 | |
| Clavulariidae_g21919 | GALACTOSE-3-O-SULFOTRANSFERASE |
| Clavulariidae_g2192 | SLL0310 PROTEIN |
| Clavulariidae_g21920 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 |
| Clavulariidae_g21921 | |
| Clavulariidae_g21922 | GLYCINE-, GLUTAMATE-, THIENYLCYCLOHEXYLPIPERIDINE-BINDING PROTEIN |
