About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21923UNCHARACTERIZED
Clavulariidae_g21924GH08155P
Clavulariidae_g21925PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2
Clavulariidae_g21926CYTOCHROME C
Clavulariidae_g21927TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11
Clavulariidae_g21928GLYCOSYLTRANSFERASE STELLO1-RELATED
Clavulariidae_g21929FANCONI ANEMIA GROUP E PROTEIN
Clavulariidae_g2193DEDICATOR OF CYTOKINESIS
Clavulariidae_g21930GLYCOSYLTRANSFERASE STELLO1-RELATED
Clavulariidae_g21931
Clavulariidae_g21932GLYCOSYLTRANSFERASE STELLO1-RELATED
Clavulariidae_g21933WD40 REPEAT PROTEIN
Clavulariidae_g21934INTEGRATOR COMPLEX SUBUNIT 3
Clavulariidae_g21935AQUAPORIN TRANSPORTER
Clavulariidae_g21936GLYCINE-RICH RNA-BINDING PROTEIN RZ1A
Clavulariidae_g21937UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g21938PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
Clavulariidae_g21939
Clavulariidae_g2194ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
Clavulariidae_g21940CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Clavulariidae_g21941ENOLASE
Clavulariidae_g21942
Clavulariidae_g21943UBIQUITINATION FACTOR E4
Clavulariidae_g21944RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Clavulariidae_g21945
Clavulariidae_g21946
Clavulariidae_g21947RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Clavulariidae_g21948NEURALIZED
Clavulariidae_g21949CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Clavulariidae_g2195ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER
Clavulariidae_g21950COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
Clavulariidae_g21951PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47
Clavulariidae_g21952PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47
Clavulariidae_g21953
Clavulariidae_g21954
Clavulariidae_g21955
Clavulariidae_g21956
Clavulariidae_g21957ALCOHOL DEHYDROGENASE RELATED
Clavulariidae_g21958
Clavulariidae_g21959PEROXISOME BIOGENESIS FACTOR 2
Clavulariidae_g2196
Clavulariidae_g21960WAP FOUR-DISULFIDE CORE DOMAIN PROTEIN 1
Clavulariidae_g21961TRANSMEMBRANE GTPASE FZO1
Clavulariidae_g21962OS02G0260700 PROTEIN
Clavulariidae_g21963
Clavulariidae_g21964
Clavulariidae_g21965CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7
Clavulariidae_g21966SMALL VASOHIBIN-BINDING PROTEIN
Clavulariidae_g21967SPERM ASSOCIATED ANTIGEN 7
Clavulariidae_g21968T4-TYPE LYSOZYME 1-RELATED
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