About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21833
Clavulariidae_g21834ELYS PROTEIN
Clavulariidae_g21835ACYL COENZYME A THIOESTER HYDROLASE
Clavulariidae_g21836IONOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g21837NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
Clavulariidae_g21838
Clavulariidae_g21839NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
Clavulariidae_g2184NITRIC OXIDE-ASSOCIATED PROTEIN 1
Clavulariidae_g21840NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
Clavulariidae_g21841IONOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g21842IONOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g21843MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN
Clavulariidae_g21844NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
Clavulariidae_g21845EPHRIN_REC_LIKE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21846SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
Clavulariidae_g21847NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER
Clavulariidae_g21848PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Clavulariidae_g21849ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Clavulariidae_g2185
Clavulariidae_g21850ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Clavulariidae_g21851LISH DOMAIN-CONTAINING PROTEIN ARMC9
Clavulariidae_g21852SOLUTE CARRIER FAMILY 35
Clavulariidae_g21853BICOID-INTERACTING PROTEIN RELATED
Clavulariidae_g21854POLYCOMB GROUP PROTEIN
Clavulariidae_g21855SUGAR KINASE
Clavulariidae_g21856SERINE/THREONINE-PROTEIN KINASE 17
Clavulariidae_g21857SOLUTE CARRIER FAMILY 22 MEMBER
Clavulariidae_g21858SOLUTE CARRIER FAMILY 22 MEMBER
Clavulariidae_g21859SH2-SH3 ADAPTOR PROTEIN-RELATED
Clavulariidae_g2186UNCHARACTERIZED
Clavulariidae_g21860ATP-BINDING TRANSPORT PROTEIN-RELATED
Clavulariidae_g21861HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Clavulariidae_g21862
Clavulariidae_g21863
Clavulariidae_g21864GALACTOSE-3-O-SULFOTRANSFERASE
Clavulariidae_g21865GALACTOSE-3-O-SULFOTRANSFERASE
Clavulariidae_g21866NXPE FAMILY MEMBER
Clavulariidae_g21867PROTEIN C20ORF116-RELATED
Clavulariidae_g21868LOQUACIOUS, ISOFORM B
Clavulariidae_g21869UNCHARACTERIZED DUF1308
Clavulariidae_g2187HOMEOBOX PROTEIN EMX-RELATED
Clavulariidae_g21870SRC-ASSOCIATED ADAPTOR PROTEIN
Clavulariidae_g21871HYALURONIDASE
Clavulariidae_g21872D-GLUCURONYL C5-EPIMERASE
Clavulariidae_g21873ATROPHIN-RELATED
Clavulariidae_g21874TRANSLOCATION PROTEIN SEC62
Clavulariidae_g21875SYNAPTOTAGMIN 14, ISOFORM D
Clavulariidae_g21876BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Clavulariidae_g21877INNER MEMBRANE TRANSPORTER YGJI-RELATED
Clavulariidae_g21878UNCHARACTERIZED
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