About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21969FIBRILLIN-RELATED
Clavulariidae_g2197
Clavulariidae_g21970INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g21971INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g21972SCP160
Clavulariidae_g2197326S PROTEASOME REGULATORY SUBUNIT
Clavulariidae_g21974RHO FAMILY GTPASE
Clavulariidae_g21975NLPC_P60 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21976AEROLYSIN-LIKE PROTEIN-RELATED
Clavulariidae_g21977PROHIBITIN
Clavulariidae_g21978UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE
Clavulariidae_g21979ARMADILLO REPEAT-CONTAINING PROTEIN 3
Clavulariidae_g2198COLLAGEN ALPHA
Clavulariidae_g21980
Clavulariidae_g21981XYLOSIDE XYLOSYLTRANSFERASE 1
Clavulariidae_g21982EPH RECEPTOR A5
Clavulariidae_g21983TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g21984EPH RECEPTOR A5
Clavulariidae_g21985ARRESTIN DOMAIN CONTAINING PROTEIN
Clavulariidae_g21986ARRESTIN DOMAIN CONTAINING PROTEIN
Clavulariidae_g21987ARRESTIN DOMAIN CONTAINING PROTEIN
Clavulariidae_g21988
Clavulariidae_g21989
Clavulariidae_g2199
Clavulariidae_g21990
Clavulariidae_g21991
Clavulariidae_g21992
Clavulariidae_g21993
Clavulariidae_g21994
Clavulariidae_g21995
Clavulariidae_g21996AMPLIFIED IN BREAST CANCER 2-RELATED
Clavulariidae_g21997DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g21998BCAS2 PROTEIN
Clavulariidae_g21999PROTEIN PHOSPHATASE 2C
Clavulariidae_g22SCAVENGER RECEPTOR DOMAIN-CONTAINING
Clavulariidae_g220COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
Clavulariidae_g2200
Clavulariidae_g22000PROPERDIN
Clavulariidae_g22001OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g22002EPH RECEPTOR A5
Clavulariidae_g22003NEPHROCYSTIN-4
Clavulariidae_g22004EPH RECEPTOR A5
Clavulariidae_g22005
Clavulariidae_g22006EPH RECEPTOR A5
Clavulariidae_g22007MIGRATION AND INVASION-INHIBITORY PROTEIN
Clavulariidae_g22008SOLUTE CARRIER FAMILY 22 MEMBER
Clavulariidae_g22009MATRIX METALLOPROTEINASE
Clavulariidae_g2201PROTEIN CBG23764
Clavulariidae_g22010
Clavulariidae_g22011
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