About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22102HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g22103
Clavulariidae_g22104COILED-COIL DOMAIN-CONTAINING PROTEIN 150
Clavulariidae_g22105COILED-COIL DOMAIN-CONTAINING PROTEIN 150
Clavulariidae_g22106RE38146P
Clavulariidae_g2210750S RIBOSOMAL PROTEIN L9
Clavulariidae_g22108VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A
Clavulariidae_g22109RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED
Clavulariidae_g2211DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g22110PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
Clavulariidae_g22111GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN
Clavulariidae_g22112UNCHARACTERIZED
Clavulariidae_g22113ELECTRON TRANSPORT PROTIN SCO1/SENC FAMILY MEMBER
Clavulariidae_g22114UNCHARACTERIZED
Clavulariidae_g22115CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Clavulariidae_g22116CHLORIDE CHANNEL PROTEIN 2
Clavulariidae_g22117
Clavulariidae_g22118DYNAMIN
Clavulariidae_g22119GMP SYNTHASE-RELATED
Clavulariidae_g2212
Clavulariidae_g22120RADICAL SAM PROTEINS
Clavulariidae_g22121COATOMER
Clavulariidae_g22122G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
Clavulariidae_g22123FORKHEAD BOX PROTEIN
Clavulariidae_g22124RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22125PROTEIN DISPATCHED HOMOLOG 3
Clavulariidae_g22126HERMANSKY-PUDLAK SYNDROME 3 PROTEIN
Clavulariidae_g22127SOLUTE CARRIER FAMILY 2
Clavulariidae_g22128
Clavulariidae_g22129NUCLEOPORIN NUP188 HOMOLOG
Clavulariidae_g2213
Clavulariidae_g22130ARGININE OR CREATINE KINASE
Clavulariidae_g22131EGF-LIKE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22132PSEUDOURIDYLATE SYNTHASE
Clavulariidae_g22133DNAJ HOMOLOG SUBFAMILY C MEMBER 11
Clavulariidae_g22134LEUCINE RICH REPEAT PROTEIN
Clavulariidae_g22135CASPASE-ACTIVATED DNASE
Clavulariidae_g22136LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
Clavulariidae_g22137SODIUM-GLUCOSE COTRANSPORTER REGULATORY PROTEIN -RELATED
Clavulariidae_g22138PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED
Clavulariidae_g22139LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD
Clavulariidae_g2214
Clavulariidae_g22140GLUTATHIONE S-TRANSFERASE KAPPA
Clavulariidae_g22141NUDIX HYDROLASE
Clavulariidae_g22142UNCHARACTERIZED
Clavulariidae_g22143ELONGATOR COMPLEX PROTEIN 5
Clavulariidae_g22144PROTEIN AF-9 HOMOLOG
Clavulariidae_g22145GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE
Clavulariidae_g22146CALCIUM BINDING PROTEIN
Clavulariidae_g22147COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17
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